Evidence map›Paper›PMID 39957491›Full record

ArticleJournal of Crohn's & colitis2025

The ulcerative colitis risk gene adenylyl cyclase 7 restrains the T-helper 2 phenotype and Class II antigen presentation.

Christopher J Cardinale, Yichuan Liu, Aayush Kevadia, Alanna Strong, Val J Watts, Hakon Hakonarson

Abstract read
In one paragraph

Article in Journal of Crohn's & colitis, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Christopher J CardinaleCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, United States.
Yichuan LiuCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, United States.
Aayush KevadiaCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, United States.
Alanna StrongCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, United States.
Val J WattsDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, IN, United States.
Hakon HakonarsonCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, United States.ORCID 0000-0003-2814-7461

Funding

Pharmacological validation of adenylyl cyclase 1 as a drug target for chronic painR01NS119917 · NINDS · PURDUE UNIVERSITY · PI FLAHERTY, DANIEL PATRICK, WATTS, VAL J · 2021 to 2025
$2.0M
NIH HHS R01 NS119917. HIC RRID: SCR_022380NINDS NIH HHS R01 NS119917
6 · The paper itself

Abstract

BACKGROUND AND

aimsGenome-wide association studies have shown that the most risk-conferring genetic polymorphism for ulcerative colitis (UC) outside the human leukocyte antigen locus is the amino acid substitution p.Asp439Glu in the adenylyl cyclase 7 gene (ADCY7). ADCY7 is the main isoform in the hematopoietic system and produces the second messenger cyclic AMP (cAMP) downstream of G protein-coupled receptor signaling. Our aim was to determine the contribution of this polymorphism to UC risk by analyzing its effect on ADCY7 function in cell-based assays.

methodsWe characterized the p.Asp439Glu variant in cell lines using western blots, immunofluorescence, cAMP assay, and luciferase assay. We modeled this variant using siRNA knock-down in human primary CD4+ T cells and characterized them by RNA-seq, viability assay, flow cytometry, cAMP assay, and ELISA.

resultsThe p.Asp439Glu variant is deficient in protein expression but retains membrane localization. This results in a 40% reduction in cAMP synthesis and luciferase reporter expression. Knock-down of ADCY7 in T cells reduces the expression of ribosomal proteins and cAMP signaling proteins, while skewing cytokine production toward a T-helper 2 pattern and upregulating antigen presentation accompanied by increased surface expression of major histocompatibility complex Class II and CD86.

conclusionsThe UC risk-conferring variant, p.Asp439Glu, in ADCY7 reduces cyclic AMP signaling, leading to modifications in cytokine profile and antigen presentation. Medications that enhance cyclic AMP by direct activation of ADCY7 or by phosphodiesterase inhibition may be beneficial in this disease.

Indexed as

Adenylyl CyclasesAntigen PresentationColitis, UlcerativeTh2 CellsCD4-Positive T-LymphocytesCyclic AMPGenetic Predisposition to DiseaseHistocompatibility Antigens Class IIHumansPhenotypeadenylyl cyclase 7Adenylyl CyclasesCyclic AMPHistocompatibility Antigens Class IIadenylyl cyclaseautoimmunityT-helper cells

Identifiers

PMID39957491
PMCPMC11920793

What Socratic holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.