Evidence map›Paper›PMID 39960487›Full record

ArticleeLife2025

Identification of nonsense-mediated decay inhibitors that alter the tumor immune landscape.

Ashley L Cook, Surojit Sur, Laura Dobbyn, Evangeline Watson, Joshua D Cohen, Blair Ptak, Bum Seok Lee, Suman Paul, Emily Hsiue, Maria Popoli and 7 more

Abstract read
In one paragraph

Article in eLife, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Nonsense-mediated mRNA decay: friend or foe in cancer biology?Cell communication and signaling : CCS · 2026
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Ashley L CookLudwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID https://orcid.org/0000-0001-6789-5732
Surojit SurLudwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID https://orcid.org/0000-0003-4536-7343
Laura DobbynDepartment of Oncology, Johns Hopkins Medical Institutions, Baltimore, United States.
Evangeline WatsonLudwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, United States.
Joshua D CohenLudwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, United States.
Blair PtakDepartment of Oncology, Johns Hopkins Medical Institutions, Baltimore, United States.
Bum Seok LeeDepartment of Oncology, Johns Hopkins Medical Institutions, Baltimore, United States.
Suman PaulLudwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, United States.
Emily HsiueLudwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, United States.
Maria PopoliLudwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, United States.
Bert VogelsteinLudwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, United States.
Nickolas PapadopoulosLudwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, United States.
Chetan BettegowdaLudwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID https://orcid.org/0000-0001-9991-7123
Kathy GabrielsonDepartment of Oncology, Johns Hopkins Medical Institutions, Baltimore, United States.
Shibin ZhouLudwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, United States.
Kenneth W KinzlerLudwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, United States.
Nicolas WyhsLudwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID https://orcid.org/0000-0003-4252-4470

Funding

Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI ALAN KEITH MEEKER · 1985 to 2026
$208.6M
TCR Targeting Antibodies for the Treatment of T cell CancersK08CA270403 · NCI · JOHNS HOPKINS UNIVERSITY · PI Suman Paul · 2022 to 2026
$1.1M
American Society of Hematology Scholar AwardLeukemia and Lymphoma Society Translation Research Program AwardNCI NIH HHS K08 CA270403NCI NIH HHS K08CA270403NCI NIH HHS P30 CA006973Oncology Core CA 06973Swim Across America Translational Cancer Research Award
6 · The paper itself

Abstract

Despite exciting developments in cancer immunotherapy, its broad application is limited by the paucity of targetable antigens on the tumor cell surface. As an intrinsic cellular pathway, nonsense-mediated decay (NMD) conceals neoantigens through the destruction of the RNA products from genes harboring truncating mutations. We developed and conducted a high-throughput screen, based on the ratiometric analysis of transcripts, to identify critical mediators of NMD in human cells. This screen implicated disruption of kinase SMG1's phosphorylation of UPF1 as a potential disruptor of NMD. This led us to design a novel SMG1 inhibitor, KVS0001, that elevates the expression of transcripts and proteins resulting from human and murine truncating mutations in vitro and murine cells in vivo. Most importantly, KVS0001 concomitantly increased the presentation of immune-targetable human leukocyte antigens (HLA) class I-associated peptides from NMD-downregulated proteins on the surface of human cancer cells. KVS0001 provides new opportunities for studying NMD and the diseases in which NMD plays a role, including cancer and inherited diseases.

Indexed as

NeoplasmsNonsense Mediated mRNA DecayAnimalsCell Line, TumorHumansMiceProtein Serine-Threonine KinasesRNA HelicasesTrans-ActivatorsProtein Serine-Threonine KinasesRNA HelicasesSMG1 protein, humanTrans-ActivatorsUPF1 protein, humancancer biologychromosomesdrug repurposinggene expressionhigh-throughput screenhumanimmunotherapymousenext-generation sequencingnonsense-mediated decay

Identifiers

PMID39960487
PMCPMC11832170

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.