Evidence map›Paper›PMID 39961540›Full record

ArticleJournal of biomedical informatics2025

Developing libraries of semantically-augmented graphics as visual standards for biomedical information systems.

Melissa D Clarkson, Steven Roggenkamp, Landon T Detwiler

Abstract read
In one paragraph

Article in Journal of biomedical informatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Melissa D ClarksonDivision of Biomedical Informatics, University of Kentucky, Multidisciplinary Science Building, Room 230C, Lexington, KY 40506, USA. Electronic address: mclarkson@uky.edu.
Steven RoggenkampDivision of Biomedical Informatics, University of Kentucky, Multidisciplinary Science Building, Room 230C, Lexington, KY 40506, USA. Electronic address: steve.roggenkamp@uky.edu.
Landon T DetwilerDivision of Biomedical Informatics, University of Kentucky, Multidisciplinary Science Building, Room 230C, Lexington, KY 40506, USA. Electronic address: todd.detwiler@uky.edu.

Funding

Developing standardized graphic libraries for anatomy: A focus on human craniofacial anatomy and phenotypesR01DE030100 · NIDCR · UNIVERSITY OF KENTUCKY · PI CLARKSON, MELISSA · 2021 to 2024
$1.4M
NIDCR NIH HHS R01 DE030100
6 · The paper itself

Abstract

objectiveVisual representations generally serve as supplements to information, rather than as bearers of computable information themselves. Our objective is to develop a method for creating semantically-augmented graphic libraries that will serve as visual standards and can be implemented as visual assets in intelligent information systems.

methodsGraphics were developed using a composable approach and specified using SVG. OWL was used to represent the entities of our system, which include elements, units, graphics, graphic libraries, and library collections. A graph database serves as our data management system. Semantics are applied at multiple levels: (a) each element is associated with a semantic style class to link visual style to semantic meaning, (b) graphics are described using object properties and data properties, (c) relationships are specified between graphics, and (d) mappings are made between the graphics and outside resources.

resultsThe Graphic Library web application enables users to browse the libraries, view information pages for each graphic, and download individual graphics. We demonstrate how SPARQL can be employed to query the graphics database and the APIs can be used to retrieve the graphics and associated data for applications. In addition, this work shows that our method of designing composable graphics is well-suited to depicting variations in human anatomy.

conclusionThis work provides a bridge between visual communication and the field of knowledge representation. We demonstrate a method for creating visual standards that are compatible with practices in biomedical ontology and implement a system for making them accessible to information systems.

Indexed as

Computer GraphicsMedical InformaticsSemanticsDatabases, FactualHumansUser-Computer InterfaceOntologySemantic webStandardsVisual communication

Identifiers

PMID39961540
PMCPMC11899390

What Socratic holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.