Evidence map›Paper›PMID 39965167›Full record

ArticleImmunoHorizons2025

Regulatory T cells in the tumor microenvironment display a unique chromatin accessibility profile.

Rebekah E Dadey, Jian Cui, Dhivyaa Rajasundaram, Hiroshi Yano, Chang Liu, Jonathan A Cohen, Andrew W Liu, Daniel H Kaplan, Creg J Workman, Dario A A Vignali

Abstract read
In one paragraph

Article in ImmunoHorizons, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Targeting collagen Prolyl 4-hydroxylase for cancer treatment.Medical oncology (Northwood, London, England) · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Rebekah E DadeyDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.
Jian CuiDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.ORCID 0000-0002-4267-9379
Dhivyaa RajasundaramDivision of Health Informatics, Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.
Hiroshi YanoDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.ORCID 0000-0002-3098-2629
Chang LiuDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.ORCID 0000-0001-8924-1772
Jonathan A CohenDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.
Andrew W LiuDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.ORCID 0000-0001-9065-6799
Daniel H KaplanDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.ORCID 0000-0003-0598-0047
Creg J WorkmanDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.ORCID 0000-0002-9964-9509
Dario A A VignaliDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.ORCID 0000-0002-2771-5992

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHRISTOPHER J. BAKKENIST · 1988 to 2026
$158.0M
Synergies among inhibitory receptors in tolerance, cancer & antiviral immunityP01AI108545 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI E. John Wherry · 2015 to 2026
$30.8M
Training in Cellular & Molecular Mechanisms of Tumor RejectionT32CA082084 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Robert J Binder, Dario AA Vignali · 1999 to 2026
$9.2M
Regulatory T cells and the tumor microenvironmentR35CA263850 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Dario AA Vignali · 2021 to 2026
$5.4M
Special BD LSRFortessaTMS10OD011925 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BORGHESI, LISA · 2012 to 2012
$383k
IFN-y drives Treg fragility through DNA methylation of the Treg-specific de-methylated regionsF31CA236337 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DADEY, REBEKAH · 2019 to 2020
$91k
NCI NIH HHS CA047904NCI NIH HHS F31 CA236337NCI NIH HHS P30 CA047904NCI NIH HHS R35 CA263850NCI NIH HHS T32 CA082084NIAID NIH HHS P01 AI108545NIH HHS 1S10OD011925-01NIH HHS R35 CA263850NIH HHS S10 OD011925
6 · The paper itself

Abstract

Regulatory T cells (Tregs) are a suppressive CD4+ T cell population that limit the antitumor immune response. In this study, we analyzed the chromatin accessibility of Tregs in the murine tumor microenvironment (TME) to identify tumor-specific accessible peaks and if these are altered over time in the tumor microenvironment, with or without anti-PD-1 immunotherapy. We found that despite little change in chromatin accessibility of Tregs in the tumor over time, Tregs have a distinct chromatin accessibility signature in the TME compared with Tregs in the periphery. This distinct tumor Treg chromatin accessibility profile highlights reduced accessibility at loci important for an CD4+ conventional T cell (CD4+ Foxp3-) effector phenotype. Analysis of chromatin accessibility in Tregs from B16 and MC38 tumor models indicated that Tregs from skin-resident tumors are most similar to naïve skin resident Tregs but still bear key differences attributable to the TME. We also found that Tregs do not alter their transcriptome or chromatin accessibility following immunotherapy. We conclude that although chromatin accessibility in Tregs is somewhat similar to their tissue residency, the TME may drive a unique chromatin accessibility profile. Treg chromatin accessibility in the tumor appears remarkably stable and unaltered by tumor type, over time, or following immunotherapy.

Indexed as

ChromatinMelanoma, ExperimentalT-Lymphocytes, RegulatoryTumor MicroenvironmentAnimalsCell Line, TumorFemaleImmunotherapyMiceMice, Inbred C57BLSkin NeoplasmsChromatinchromatin accessibilityimmunotherapyregulatory T cellstumor immunology

Identifiers

PMID39965167
PMCPMC11841976

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.