Evidence map›Paper›PMID 39975111›Full record

ArticlebioRxiv : the preprint server for biology2025

Dynamic

Pramesh Shakya, Ahsan Sanaullah, Degui Zhi, Shaojie Zhang

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Pramesh ShakyaDepartment of Computer Science, University of Central Florida , Orlando, FL, USA.ORCID 0000-0003-2708-9933
Ahsan SanaullahDepartment of Computer Science, University of Central Florida , Orlando, FL, USA.
Degui ZhiMcWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, TX, USA.ORCID 0000-0001-7754-1890
Shaojie ZhangDepartment of Computer Science, University of Central Florida , Orlando, FL, USA.ORCID 0000-0002-4051-5549

Funding

Scalable methods for identity by descentR01HG010086 · NHGRI · YALE UNIVERSITY · PI Shaojie Zhang, Degui Zhi · 2018 to 2026
$4.9M
Efficient IBD mapping for Alzheimer's Disease and related brain imaging phenotypesR01AG081398 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Han Chen, Degui Zhi · 2024 to 2026
$2.1M
NHGRI NIH HHS R01 HG010086NIA NIH HHS R01 AG081398
6 · The paper itself

Abstract

Durbin's positional Burrows-Wheeler transform (PBWT) supports efficient haplotype matching and queries given a panel of haplotypes. It has been widely used for statistical phasing, imputation and identity-by-descent (IBD) detection. However, the original PBWT panel doesn't support dynamic updates when haplotypes need to be added or deleted from the panel. Dynamic-PBWT (d-PBWT) solved this problem but it is not memory efficient. While the memory constraint problem of the PBWT has been tackled by Syllable-PBWT and

Indexed as

Biobankd-PBWTDynamic μ-PBWTHaplotype MatchingPBWTRun-Length CompressionSyllable-PBWTμ-PBWT

Identifiers

PMID39975111
PMCPMC11838588

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.