Evidence map›Paper›PMID 39979331›Full record

ArticleNature communications2025

Peroxisomal core structures segregate diverse metabolic pathways.

Nils Bäcker, Julia Ast, Domenica Martorana, Christian Renicke, Jil Berger, Cristopher-Nils Mais, Marvin Christ, Thorsten Stehlik, Thomas Heimerl, Valentin Wernet and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Studying Peroxisomes in Ustilago maydis: A Defined Workflow.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Nils Bäcker *Center for Synthetic Microbiology (SYNMIKRO), Philipps-University Marburg, Marburg, Germany.
Julia Ast *Department of Biology, Philipps-University Marburg, Marburg, Germany.
Domenica Martorana *Department of Biology, Philipps-University Marburg, Marburg, Germany.
Christian RenickeDepartment of Biology, Philipps-University Marburg, Marburg, Germany.ORCID http://orcid.org/0000-0003-3226-9840
Jil BergerCenter for Synthetic Microbiology (SYNMIKRO), Philipps-University Marburg, Marburg, Germany.
Cristopher-Nils MaisCenter for Synthetic Microbiology (SYNMIKRO), Philipps-University Marburg, Marburg, Germany.
Marvin ChristCenter for Synthetic Microbiology (SYNMIKRO), Philipps-University Marburg, Marburg, Germany.
Thorsten StehlikDepartment of Biology, Philipps-University Marburg, Marburg, Germany.
Thomas HeimerlCenter for Synthetic Microbiology (SYNMIKRO), Philipps-University Marburg, Marburg, Germany.
Valentin WernetDepartment of Microbiology, Institute for Applied Biosciences, KIT, Karlsruhe, Germany.
Christof TaxisCenter for Synthetic Microbiology (SYNMIKRO), Philipps-University Marburg, Marburg, Germany.ORCID http://orcid.org/0000-0001-5952-7091
Jan Pané-FarréCenter for Synthetic Microbiology (SYNMIKRO), Philipps-University Marburg, Marburg, Germany.
Michael BölkerCenter for Synthetic Microbiology (SYNMIKRO), Philipps-University Marburg, Marburg, Germany.ORCID http://orcid.org/0000-0002-7366-3855
Judith M KlattCenter for Synthetic Microbiology (SYNMIKRO), Philipps-University Marburg, Marburg, Germany.
Björn SandrockDepartment of Biology, Philipps-University Marburg, Marburg, Germany.ORCID http://orcid.org/0000-0002-0478-2877
Kay Oliver SchinkCentre for Cancer Cell Reprogramming, Faculty of Medicine, University of Oslo, Montebello, Oslo, Norway. k.o.schink@medisin.uio.no.
Gert BangeCenter for Synthetic Microbiology (SYNMIKRO), Philipps-University Marburg, Marburg, Germany. gert.bange@synmikro.uni-marburg.de.ORCID http://orcid.org/0000-0002-7826-0932
Johannes FreitagCenter for Synthetic Microbiology (SYNMIKRO), Philipps-University Marburg, Marburg, Germany. johannes.freitag@biologie.uni-marburg.de.ORCID http://orcid.org/0000-0002-8251-4878

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) FR-3586/2-1Deutsche Forschungsgemeinschaft (German Research Foundation) SA1018/5-1
6 · The paper itself

Abstract

Peroxisomes are single membrane-bounded oxidative organelles with various metabolic functions including β-oxidation of fatty acids. Peroxisomes of many species confine certain metabolic enzymes into sub-compartments sometimes visible as electron dense cores. Why these structures form is largely unknown. Here, we report that in the smut fungus Ustilago maydis detergent resistant core structures are enriched for different enzymes excluding several key enzymes of the β-oxidation pathway. This confinement contributes to generation of peroxisome subpopulations that differ in their enzyme content. We identify short amino acid motifs necessary and sufficient for protein self-assembly into aggregates in vitro. The motifs trigger enrichment in cores in vivo and are active in mammalian cells. Perturbation of core assembly via variation of such motifs affects peroxisome function in U. maydis strains challenged with fatty acids. Thus, protein core structures serve to compartmentalize the lumen of peroxisomes thereby preventing interference of biochemical reactions. Metabolic compartmentalization of peroxisomes via assembly of specific proteins may occur in other organisms as well.

Indexed as

Metabolic Networks and PathwaysPeroxisomesUstilagoAmino Acid MotifsAnimalsFatty AcidsFungal ProteinsHumansOxidation-ReductionFatty AcidsFungal Proteins

Identifiers

PMID39979331
PMCPMC11842775

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.