Evidence map›Paper›PMID 39999874›Full record

ArticleOpen biology2025

A high-throughput protein tagging toolkit that retains endogenous untranslated regions for studying gene regulation in kinetoplastids.

Carla Gilabert Carbajo, Xiaoyang Han, Bhairavi Savur, Arushi Upadhyaya, Fatima Taha, Michele Tinti, Richard J Wheeler, Phillip A Yates, Calvin Tiengwe

Abstract read
In one paragraph

Article in Open biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Carla Gilabert CarbajoDepartment of Life Sciences, Imperial College London, London, UK.
Xiaoyang HanDepartment of Life Sciences, Imperial College London, London, UK.
Bhairavi SavurDepartment of Life Sciences, Imperial College London, London, UK.
Arushi UpadhyayaDepartment of Life Sciences, Imperial College London, London, UK.
Fatima TahaDepartment of Life Sciences, Imperial College London, London, UK.
Michele TintiWellcome Trust Centre for Anti-Infectives Research, University of Dundee, Dundee, UK.
Richard J WheelerPeter Medawar Building for Pathogen Research, University of Oxford, Oxford, UK.
Phillip A YatesDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, OR, USA.ORCID 0000-0003-2016-9789
Calvin TiengweDepartment of Life Sciences, Imperial College London, London, UK.ORCID 0000-0002-3742-6502

Funding

Developing a versatile genetic toolbox for Leishmania using 2A peptide technologyR03AI137636 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI YATES, PHILLIP A · 2018 to 2019
$154k
NHLBI NIH HHSNIAID NIH HHS R03 AI137636Wellcome Trust
6 · The paper itself

Abstract

Kinetoplastid parasites cause diseases that threaten human and animal health. To survive transitions between vertebrate hosts and insect vectors, these parasites rely on precise regulation of gene expression to adapt to environmental changes. Since gene regulation in kinetoplastids is primarily post-transcriptional, developing efficient genetic tools for modifying genes at their endogenous loci while preserving regulatory mRNA elements is crucial for studying their complex biology. We present a CRISPR/Cas9-based tagging system that preserves untranslated regulatory elements and uses a viral 2A peptide from

Indexed as

Gene Expression RegulationKinetoplastidaProtozoan ProteinsTrypanosoma brucei bruceiUntranslated RegionsCRISPR-Cas SystemsGene EditingProtozoan ProteinsUntranslated RegionsCRISPR/Cas9endogenous tagginggene regulationkinetoplastidsT2A peptideTrypanosoma brucei

Identifiers

PMID39999874
PMCPMC11858757

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.