Evidence map›Paper›PMID 40004515›Full record

ArticleGenes2025

Analysis of the Codon Usage Bias Pattern in the Chloroplast Genomes of

Jisi Zhang, Miao Feng

Abstract read
In one paragraph

Article in Genes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. The Pan-Plastome of Walnuts (International journal of molecular sciences · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Complete Chloroplast Genome Analysis ofPlants (Basel, Switzerland) · 2025
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Jisi ZhangLiaoning Key Laboratory of Development and Utilization for Natural Products Active Molecules, Anshan Normal University, Anshan 114000, China.ORCID 0009-0002-9128-9243
Miao FengLiaoning Key Laboratory of Development and Utilization for Natural Products Active Molecules, Anshan Normal University, Anshan 114000, China.ORCID 0009-0002-8612-5033

Funding

Funding of Liaoning Key Laboratory of Development LZ202301
6 · The paper itself

Abstract

backgroundThe codon preference of chloroplast genomes not only reflects mutation patterns during the evolutionary processes of species but also significantly affects the efficiency of gene expression. This characteristic holds significant scientific importance in the application of chloroplast genetic engineering and the genetic improvement of species.

methodsTo investigate codon usage bias and its influencing factors in

resultsIn this study, we reported and characterized the complete chloroplast genome of the Chinese endemic species

conclusionsWe newly obtained the chloroplast genome of

Indexed as

Codon UsageGenome, ChloroplastMagnoliopsidaBase CompositionChloroplastsCodonEvolution, MolecularPhylogenyCodonChloranthuschloroplast genomecodon usage biasphylogeny

Identifiers

PMID40004515
PMCPMC11855406

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.