Genome-Wide In Silico Analysis of Leucine-Rich Repeat

Seon-Hwa Bae, Yedomon Ange Bovys Zoclanclounon, Gyu-Hwang Park, Jun-Dae Lee, Tae-Ho Kim

Abstract read

In one paragraph

Article in Genes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it

0cells of the map it votes in

1citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

Identification and Development of Pathogen- and Pest-Specific Defense-Resistance-Associated SSR Marker Candidates Assisted by Machine Learning and Discovery of Putative QTL Hotspots inPlants (Basel, Switzerland) · 2026
Article

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Seon-Hwa BaeFruit Research Division, National Institute of Horticultural and Herbal Science, Rural Development Administration, Iseo-myeon, Wanju-gun 55365, Republic of Korea.ORCID 0000-0002-1040-8128

Yedomon Ange Bovys ZoclanclounonPlant Sciences and the Bioeconomy, Rothamsted Research, Harpenden AL5 2JQ, UK.ORCID 0000-0003-2781-0778

Gyu-Hwang ParkGenomics Division, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju-si 54874, Republic of Korea.

Jun-Dae LeeDepartment of Horticulture, College of Agriculture and Life Sciences, Jeonbuk National University, Jeonju-si 54896, Republic of Korea.ORCID 0000-0002-2029-5702

Tae-Ho KimGenomics Division, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju-si 54874, Republic of Korea.

Funding

Rural Development Administration PJ013355

6 · The paper itself

Abstract

backgroundResistance (

methodsPreviously conducted genome-wide data for 'Jeju17' were analyzed in silico to identify NBS-LRR genes.

resultsA total of 535 NBS-LRR genes were identified, with clusters on chromosomes 2, 4, and 10. A unique RPW8-type

conclusionsThis study provides insights into the NBS-LRR gene family in 'Je-ju17', highlighting its role in disease resistance and evolutionary dynamics. By identifying can-didate

Indexed as

Disease ResistancePlant ProteinsChromosomes, PlantComputer SimulationGene Expression Regulation, PlantGenome, PlantLeucine-Rich Repeat ProteinsMultigene FamilyPlant DiseasesLeucine-Rich Repeat ProteinsPlant Proteinsdisease resistancegenomic distributionnucleotide-binding site leucine-rich repeat (NBS-LRR)Perilla citriodora genomeresistance genes (R-genes)tissue-specific expression

Identifiers

PMID40004529

DOI10.3390/genes16020200

PMCPMC11855831

What Socratic holds

Textmetadata

LicenceCC BY

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.