Evidence map›Paper›PMID 40015257›Full record

ArticleJournal of innate immunity2025

Neutrophils Display Novel Partners of Cytosolic Proliferating Cell Nuclear Antigen Involved in Interferon Response in COVID-19 Patients.

Lucie Pesenti, Rodrigo de Oliveira Formiga, Nicola Tamassia, Elisa Gardiman, François Chable de La Héronnière, Sara Gasperini, Johana Chicher, Lauriane Kuhn, Philippe Hammann, Morgane Le Gall and 11 more

Abstract read
In one paragraph

Article in Journal of innate immunity, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Cytosolic proliferating cell nuclear antigen (PCNA) orchestrates neutrophil hyperactivation in COVID-19.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Lucie PesentiINSERM U1016, Institut Cochin, CNRS 8104, Université Paris Cité, Paris, France.
Rodrigo de Oliveira FormigaINSERM U1016, Institut Cochin, CNRS 8104, Université Paris Cité, Paris, France.
Nicola TamassiaDepartment of Medicine, Section of General Pathology, University of Verona, Verona, Italy.
Elisa GardimanDepartment of Medicine, Section of General Pathology, University of Verona, Verona, Italy.
François Chable de La HéronnièreINSERM U1016, Institut Cochin, CNRS 8104, Université Paris Cité, Paris, France.
Sara GasperiniDepartment of Medicine, Section of General Pathology, University of Verona, Verona, Italy.
Johana ChicherStrasbourg-Esplanade Proteomics Platform, CNRS UAR1589, Molecular and Cellular Biology Institute, University of Strasbourg, Strasbourg, France.
Lauriane KuhnStrasbourg-Esplanade Proteomics Platform, CNRS UAR1589, Molecular and Cellular Biology Institute, University of Strasbourg, Strasbourg, France.
Philippe HammannStrasbourg-Esplanade Proteomics Platform, CNRS UAR1589, Molecular and Cellular Biology Institute, University of Strasbourg, Strasbourg, France.
Morgane Le GallINSERM U1016, Institut Cochin, CNRS 8104, Université Paris Cité, Paris, France.
Giovanni Saraceni-TassoINSERM U1016, Institut Cochin, CNRS 8104, Université Paris Cité, Paris, France.
Clémence MartinINSERM U1016, Institut Cochin, CNRS 8104, Université Paris Cité, Paris, France.
Anne HosmalinINSERM U1016, Institut Cochin, CNRS 8104, Université Paris Cité, Paris, France.
Magali BrecklerINSERM UMR 1125, Bobigny, France.
Roxane HervéINSERM UMR 1125, Bobigny, France.
Patrice DeckerINSERM UMR 1125, Bobigny, France.
Maha Zohra LadjemiINSERM U1016, Institut Cochin, CNRS 8104, Université Paris Cité, Paris, France.
Frédéric PèneINSERM U1016, Institut Cochin, CNRS 8104, Université Paris Cité, Paris, France.
Pierre-Régis BurgelINSERM U1016, Institut Cochin, CNRS 8104, Université Paris Cité, Paris, France.
Marco A CassatellaDepartment of Medicine, Section of General Pathology, University of Verona, Verona, Italy.
Véronique Witko-SarsatINSERM U1016, Institut Cochin, CNRS 8104, Université Paris Cité, Paris, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionNeutrophils are key players in the hyperinflammatory response during SARS-CoV-2 infection. The cytosolic proliferating cell nuclear antigen (PCNA) is a scaffolding protein highly dependent on the microenvironment status and known to interact with numerous proteins that regulate neutrophil functions. This study aimed to examine the cytosolic protein content and PCNA interactome in neutrophils from COVID-19 patients.

methodsProteomic analyses were performed on neutrophil cytosols from healthy donors and patients with severe or critical COVID-19. In vitro approaches were used to explore the biological significance of the COVID-19-specific PCNA interactome.

resultsNeutrophil cytosol analysis revealed a strong interferon (IFN) protein signature, with variations according to disease severity. Interactome analysis identified associations of PCNA with proteins involved in interferon signaling, cytoskeletal organization, and neutrophil extracellular trap (NET) formation, such as protein arginine deiminase type-4 (PADI4) and histone H3, particularly in critical patients. Functional studies of interferon signaling showed that T2AA, a PCNA scaffold inhibitor, downregulated IFN-related genes, including STAT1, MX1, IFIT1, and IFIT2 in neutrophils. Additionally, T2AA specifically inhibited the secretion of CXCL10, an IFN-dependent cytokine. PCNA was also found to interact with key effector proteins implicated in NET formation, such as histone H3, especially in critical COVID-19 cases.

conclusionThe analysis of the PCNA interactome has unveiled new protein partners that enhance the interferon pathway, thereby modulating immune responses and contributing to hyperinflammation in COVID-19. These findings provide valuable insights into interferon dysregulation in other immune-related conditions.

introductionNeutrophils are key players in the hyperinflammatory response during SARS-CoV-2 infection. The cytosolic proliferating cell nuclear antigen (PCNA) is a scaffolding protein highly dependent on the microenvironment status and known to interact with numerous proteins that regulate neutrophil functions. This study aimed to examine the cytosolic protein content and PCNA interactome in neutrophils from COVID-19 patients.

methodsProteomic analyses were performed on neutrophil cytosols from healthy donors and patients with severe or critical COVID-19. In vitro approaches were used to explore the biological significance of the COVID-19-specific PCNA interactome.

resultsNeutrophil cytosol analysis revealed a strong interferon (IFN) protein signature, with variations according to disease severity. Interactome analysis identified associations of PCNA with proteins involved in interferon signaling, cytoskeletal organization, and neutrophil extracellular trap (NET) formation, such as protein arginine deiminase type-4 (PADI4) and histone H3, particularly in critical patients. Functional studies of interferon signaling showed that T2AA, a PCNA scaffold inhibitor, downregulated IFN-related genes, including STAT1, MX1, IFIT1, and IFIT2 in neutrophils. Additionally, T2AA specifically inhibited the secretion of CXCL10, an IFN-dependent cytokine. PCNA was also found to interact with key effector proteins implicated in NET formation, such as histone H3, especially in critical COVID-19 cases.

conclusionThe analysis of the PCNA interactome has unveiled new protein partners that enhance the interferon pathway, thereby modulating immune responses and contributing to hyperinflammation in COVID-19. These findings provide valuable insights into interferon dysregulation in other immune-related conditions.

Indexed as

COVID-19InterferonsNeutrophilsProliferating Cell Nuclear AntigenSARS-CoV-2AdultAgedCytosolExtracellular TrapsFemaleHumansMaleMiddle AgedProteomicsSignal TransductionInterferonsPCNA protein, humanProliferating Cell Nuclear AntigenCOVID-19Histone 3InterferonNeutrophilsPAD4Proliferating cell nuclear antigen

Identifiers

PMID40015257
PMCPMC11867639

What Socratic holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.