Evidence map›Paper›PMID 40020056›Full record

ArticleScience advances2025

Benchmarking macaque brain gene expression for horizontal and vertical translation.

Andrea I Luppi, Zhen-Qi Liu, Justine Y Hansen, Rodrigo Cofre, Meiqi Niu, Elena Kuzmin, Seán Froudist-Walsh, Nicola Palomero-Gallagher, Bratislav Misic

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Cellular basis for cortical network aging in primates.bioRxiv : the preprint server for biology · 2025
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Andrea I LuppiMontréal Neurological Institute, McGill University, Montréal, QC, Canada.ORCID 0000-0002-3461-6431
Zhen-Qi LiuMontréal Neurological Institute, McGill University, Montréal, QC, Canada.ORCID 0000-0003-0917-7905
Justine Y HansenMontréal Neurological Institute, McGill University, Montréal, QC, Canada.ORCID 0000-0003-3142-7480
Rodrigo CofreParis-Saclay University, CNRS, Paris-Saclay Institute for Neuroscience (NeuroPSI), Saclay, France.ORCID 0000-0002-7498-7122
Meiqi NiuInstitute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Jülich, Germany.ORCID 0000-0001-7937-5814
Elena KuzminDepartment of Biology, Centre for Applied Synthetic Biology, Concordia University, Montréal, QC, Canada.ORCID 0000-0002-7479-9308
Seán Froudist-WalshBristol Computational Neuroscience Unit, Bristol University, Bristol, UK.
Nicola Palomero-GallagherInstitute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Jülich, Germany.ORCID 0000-0003-4463-8578
Bratislav MisicMontréal Neurological Institute, McGill University, Montréal, QC, Canada.ORCID 0000-0003-0307-2862

Funding

Wellcome Trust 226924
6 · The paper itself

Abstract

The spatial patterning of gene expression shapes cortical organization and function. The macaque is a fundamental model organism in neuroscience, but the translational potential of macaque gene expression rests on the assumption that it is a good proxy for patterns of corresponding proteins (vertical translation) and for patterns of orthologous human genes (horizontal translation). Here, we systematically benchmark regional gene expression in macaque cortex against (i) macaque cortical receptor density and in vivo and ex vivo microstructure and (ii) human cortical gene expression. We find moderate cortex-wide correspondence between macaque gene expression and protein density, which improves by considering layer-specific gene expression. Half of the examined genes exhibit significant correlation between macaque and human across the cortex. Interspecies correspondence of gene expression is greater in unimodal than in transmodal cortex, recapitulating evolutionary cortical expansion and gene-protein correspondence in the macaque. These results showcase the potential and limitations of macaque cortical transcriptomics for translational discovery within and across species.

Indexed as

BrainGene ExpressionGene Expression RegulationMacacaProtein BiosynthesisAnimalsBenchmarkingCerebral CortexGene Expression ProfilingHumansTranscriptome

Identifiers

PMID40020056
PMCPMC11870082

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.