Evidence map›Paper›PMID 40076868›Full record

ArticleInternational journal of molecular sciences2025

Putative Epigenetic Regulator microRNAs (epi-miRNAs) and Their Predicted Targets in High-Fat Diet-Induced Cardiac Dysfunction: An In Silico Analysis in Obese Rats.

Márton Pipicz, Gergő Zalán Biró, Márton Richárd Szabó, Ágnes Zvara, Tamás Csont

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Márton PipiczDepartment of Biochemistry, Albert Szent-Györgyi Medical School, University of Szeged, H-6720 Szeged, Hungary.ORCID 0000-0002-0944-1684
Gergő Zalán BiróDepartment of Biochemistry, Albert Szent-Györgyi Medical School, University of Szeged, H-6720 Szeged, Hungary.
Márton Richárd SzabóDepartment of Biochemistry, Albert Szent-Györgyi Medical School, University of Szeged, H-6720 Szeged, Hungary.ORCID 0000-0003-0415-5192
Ágnes ZvaraLaboratory of Functional Genomics, Core Facility, HUN-REN Biological Research Centre, H-6726 Szeged, Hungary.
Tamás CsontDepartment of Biochemistry, Albert Szent-Györgyi Medical School, University of Szeged, H-6720 Szeged, Hungary.ORCID 0000-0001-5792-2768

Funding

Ministry of Culture and Innovation of Hungary from the National Research, Development and Innovation Fund TKP2021-EGA-32National Academy of Scientist Education Program of the National Biomedical Foundation, Hungarian Ministry of Culture and InnovationNational Research, Development, and Innovation Office 2023-1.1.1-PIACI_FÓKUSZ-2024-00036, 2020-1.1.6-JÖVŐ-2021-00003, 2022-1.2.6-TÉT-IPARI-TR-2022-00023National Research, Development, and Innovation Office of the Hungarian Government NKFIH K-143889
6 · The paper itself

Abstract

Obesity-related cardiac dysfunction is a significant global health challenge. High-fat diets (HFDs) are well-established models of obesity. HFD has been reported to induce cardiac dysfunction and alter cardiac miRNA expression, DNA methylation and histone modifications. Nevertheless, it remains unclear whether cardiac miRNAs altered due to HFD target epigenetic regulator enzymes and function as epigenetic regulator miRNAs (epi-miRNAs), thereby contributing to HFD-induced epigenetic changes and cardiac dysfunction. To address this gap in our knowledge, this study aimed to identify putative cardiac epi-miRNAs and their potential epigenetic targets through an in silico analysis of a previously published miRNA dataset from Sprague Dawley rats subjected to HFD. Using two independent databases, miRDB and miRWalk, predicted miRNA-mRNA interactions were analyzed. A total of 71 miRNAs were identified in our present study as putative epi-miRNAs. A total of 34 epi-miRNAs were upregulated (e.g., miR-92b-3p, let-7c-5p, miR-132-3p), and 37 were downregulated (e.g., miR-21-3p, miR-29c-3p, miR-199a-3p) in response to HFD. Epi-miRNAs targeted 81 individual epigenetic regulators (e.g., Dnmt3a, Ezh2, Hdac4, Kdm3a) with 202 possible miRNA-target interactions. Most of the targeted epigenetic regulators were involved in histone modification. An epi-miRNA-target analysis indicated increased DNA methylation and histone acetylation and decreased histone methylation in the hearts of HFD-fed rats. These findings suggest the importance of epi-miRNA-induced epigenetic changes in HFD-related cardiac dysfunction.

Indexed as

Diet, High-FatEpigenesis, GeneticHeart DiseasesMicroRNAsObesityAnimalsComputational BiologyComputer SimulationDNA MethylationGene Expression RegulationHistone DeacetylasesMaleRatsRats, Sprague-DawleyHistone DeacetylasesMicroRNAscardiac dysfunctioncardiac remodelingDNA methylationepigenetic regulatorsepi-miRNAshigh-fat diethistone modificationmiRNA-mRNA interactionsnetwork analysis

Identifiers

PMID40076868
PMCPMC11900980

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.