Evidence map›Paper›PMID 40079162›Full record

ArticleJournal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research2025

Sequence Diversity in the 3' Untranslated Region of Alphavirus Modulates IFIT2-Dependent Restriction in a Cell Type-Dependent Manner.

Sarah E Hickson, Eden Brekke, Johannes Schwerk, Indraneel Saluhke, Shivam Zaver, Joshua Woodward, Ram Savan, Jennifer L Hyde

Abstract read
In one paragraph

Article in Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sarah E HicksonDepartment of Microbiology, Seattle School of Medicine, University of Washington, Seattle, Washington, USA.
Eden BrekkeDepartment of Microbiology, Seattle School of Medicine, University of Washington, Seattle, Washington, USA.
Johannes SchwerkDepartment of Immunology, University of Washington School of Medicine, Seattle, Washington, USA.
Indraneel SaluhkeDepartment of Microbiology, Seattle School of Medicine, University of Washington, Seattle, Washington, USA.
Shivam ZaverDepartment of Microbiology, Seattle School of Medicine, University of Washington, Seattle, Washington, USA.
Joshua WoodwardDepartment of Microbiology, Seattle School of Medicine, University of Washington, Seattle, Washington, USA.
Ram SavanDepartment of Immunology, University of Washington School of Medicine, Seattle, Washington, USA.
Jennifer L HydeDepartment of Microbiology, Seattle School of Medicine, University of Washington, Seattle, Washington, USA.ORCID 0000-0001-8062-1672

Funding

Regulation of RNA sensing and viral restriction by RNA structuresR01AI155416 · NIAID · WASHINGTON UNIVERSITY · PI Jennifer Lynn Hyde · 2023 to 2026
$1.7M
NIAID NIH HHS R01 AI155416
6 · The paper itself

Abstract

Alphaviruses (family Togaviridae) are a diverse group of positive-sense RNA (+ssRNA) viruses that are transmitted by arthropods and are the causative agent of several significant human and veterinary diseases. Interferon (IFN)-induced proteins with tetratricopeptide repeats (IFITs) are a family of RNA-binding IFN-stimulated genes (ISGs) that are highly upregulated following viral infection and have been identified as potential restrictors of alphaviruses. The mechanism by which IFIT1 restricts RNA viruses is dependent on self and non-self-discrimination of RNA, and alphaviruses evade this recognition via their 5' untranslated region (UTR). However, the role of IFIT2 during alphavirus replication and the mechanism of viral replication inhibition is unclear. In this study, we identify IFIT2 as a restriction factor for Venezuelan equine encephalitis virus (VEEV) and show that IFIT2 binds the 3' 3'UTR of the virus. We investigated the potential role of variability in the 3'UTR of the virus affecting IFIT2 antiviral activity by studying infection with VEEV. Comparison of recombinant VEEV clones containing 3'UTR sequences derived from epizootic and enzootic isolates exhibited differential sensitivity to IFIT2 restriction

Indexed as

3' Untranslated RegionsAlphavirusEncephalitis Virus, Venezuelan EquineGenetic VariationAnimalsApoptosis Regulatory ProteinsHumansRNA-Binding ProteinsVirus Replication3' Untranslated RegionsApoptosis Regulatory ProteinsIFIT2 protein, humanRNA-Binding ProteinsalphavirusIFIT2RNA structureVEEV

Identifiers

PMID40079162
PMCPMC12491954

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.