Evidence map›Paper›PMID 40087613›Full record

ArticleBMC plant biology2025

Transcriptomic and proteomic-based analysis of the mechanisms by which drought and salt stresses affect the quality of Isatidis Folium.

Zhiying Wang, Baorui Cao, Jinxin Du, Tingting Deng, Ruyu Wang, Yiwei Chen, Xue Li, Jialei Fu, Jingxiang Pang, Meina Yang and 1 more

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Genome-Wide Expression Profile ofInternational journal of molecular sciences · 2025
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Zhiying Wang *Department of Clinical Pharmacy, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan, China.
Baorui Cao *Department of Clinical Pharmacy, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan, China.
Jinxin DuBiomedical Sciences College & Shandong Medical Biotechnology Research Center, National Health Commission Key Laboratory of Biotechnology Drugs, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, China.
Tingting DengCollege of Traditional Chinese Medicine, Shandong University of Traditional Chinese Medicine, Jinan, China.
Ruyu WangBiomedical Sciences College & Shandong Medical Biotechnology Research Center, National Health Commission Key Laboratory of Biotechnology Drugs, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, China.
Yiwei ChenBiomedical Sciences College & Shandong Medical Biotechnology Research Center, National Health Commission Key Laboratory of Biotechnology Drugs, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, China.
Xue LiBiomedical Sciences College & Shandong Medical Biotechnology Research Center, National Health Commission Key Laboratory of Biotechnology Drugs, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, China.
Jialei FuInstitute of Traditional Chinese Medicine Pharmacology, Shandong Academy of Chinese Medicine, Jinan, China.
Jingxiang PangBiomedical Sciences College & Shandong Medical Biotechnology Research Center, National Health Commission Key Laboratory of Biotechnology Drugs, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, China.
Meina Yang *Department of Clinical Pharmacy, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan, China. xz19560659193@163.com.
Jinxiang Han *Department of Clinical Pharmacy, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Isatidis Folium, derived from the dried leaves of Isatis indigotica Fort., has been used for centuries as a traditional Chinese herb with antibacterial and antiviral properties. However, heterogeneity in cultivation conditions and climatic variations poses challenges to accurately and effectively evaluate its quality. Current quality control methods cannot provide a comprehensive and effective identification of herbal quality and preparation efficacy. This study aimed to investigate the impact of different environmental factors on the biosynthesis and accumulation of medicinal components and identify biomarker genes and functional proteins associated with abiotic stress responses of Isatis indigotica Fort. We proposed evaluating the quality of Isatidis Folium based on multi-component quantitative analysis and integrating transcriptomic, proteomic, and physiological indicators to elucidate the mechanisms of herbal quality variation. The results revealed that abiotic stress conditions significantly altered the levels of bioactive constituents, physiological indices, and specific genes and proteins. Notably, biological pathways such as porphyrin metabolism, photosynthesis, and carbon fixation by photosynthetic organisms were implicated in phototoxicity within the photosystem under abiotic stresses. Biological pathways related to indole metabolism, specifically phenylalanine, tyrosine, and tryptophan synthesis, tryptophan metabolism, and indole alkaloid synthesis, were recognized as critical regulatory networks modulating indole alkaloid content. Candidate biomarkers such as HemB, PsbB, RBS2, RIBA2, TRPA, and TRPB were identified as potential factors of quality deterioration under adverse conditions. Based on the integration of chemical analysis and multi-omics techniques, a new hierarchical quality control scenario for Isatidis Folium was finally proposed, providing a research foundation for the innovation-driven development of traditional Chinese medicine.

Indexed as

DroughtsIsatisSalt StressTranscriptomeGene Expression ProfilingGene Expression Regulation, PlantPlant LeavesPlant ProteinsProteomeProteomicsStress, PhysiologicalPlant ProteinsProteomeBiological mechanismHerbal qualityIsatidis FoliumMulti-component quantitative analysisProteomicStressTranscriptomic

Identifiers

PMID40087613
PMCPMC11907893

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.