Evidence map›Paper›PMID 40087884›Full record

ArticleNucleic acids research2025

Transcription factor VIB-1 activates catalase-3 expression by promoting PIC assembly in Neurospora crassa.

Huan Liu, Qin Zhang, Fusheng Huang, Shuangjie Shen, Moater Altaf, Ying Wang, Xiao Liu, Qun He

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Early Cellular Responses ofAntibiotics (Basel, Switzerland) · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Huan LiuMOA Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing100193, China.
Qin ZhangMOA Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing100193, China.
Fusheng HuangMOA Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing100193, China.
Shuangjie ShenMOA Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing100193, China.
Moater AltafMOA Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing100193, China.
Ying WangMOA Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing100193, China.
Xiao LiuState Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing100101, China.ORCID 0000-0001-6053-132X
Qun HeMOA Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing100193, China.ORCID 0000-0002-2629-1673

Funding

China Agricultural UniversityChinese Academy of Sciences XDA28030402National Key R&D Program of China 2018YFA0900500
6 · The paper itself

Abstract

The "p53-like" superfamily transcription factor, VIB-1, plays a crucial role in mediating heterokaryon incompatibility and regulating the transcription of specific genes involved in the secretion of extracellular hydrolases in Neurospora crassa. However, the precise mechanism underlying the transcriptional regulatory function of VIB-1 is still poorly understood. Here, we reveal that VIB-1 is involved in the H2O2-induced oxidative stress response, in which deletion of vib-1 leads to an H2O2-sensitive phenotype and inhibition of cat-3 expression. Conversely, VIB-1 overexpression confers an H2O2-resistant phenotype and robustly activates cat-3 in a dose-dependent manner. Importantly, we identified the DNA-binding domain of VIB-1 as the key component required for these regulatory processes. Furthermore, VIB-1 activates cat-3 transcription by interacting with and recruiting general transcription factors and RNA polymerase II to the cat-3 promoter, resulting in eviction of H2A.Z and a decrease in nucleosome density in these regions. Additionally, VIB-1 positively regulated the expression of other two target genes, NCU05841 and NCU02904, in the same manner. Together, our findings reveal a mechanism by which VIB-1 is involved in the transcriptional activation of cat-3 and other VIB-1-targeted genes by promoting PIC assembly on their promoters.

Indexed as

CatalaseFungal ProteinsGene Expression Regulation, FungalNeurospora crassaTranscription FactorsHistonesHydrogen PeroxideNucleosomesOxidative StressPromoter Regions, GeneticRNA Polymerase IITranscriptional ActivationCatalaseFungal ProteinsHistonesHydrogen PeroxideNucleosomesRNA Polymerase IITranscription Factors

Identifiers

PMID40087884
PMCPMC11904784

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.