Evidence map›Paper›PMID 40128192›Full record

ArticleScientific data2025

Chromosome-level assembly of Prunus serrula Franch genome.

Hao Zuo, Shengjun Liu, Lei Tan, Yue Huang, Yuanrong Li, Pingcuo Gesang, Ying Hong, Xiuxin Deng, Xia Wang, Qiang Xu and 2 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Hao Zuo *Qinghai-Tibet Plateau Fruit Trees Scientific Observation Test Station (Ministry of Agriculture and Rural Affairs), Lhasa, Tibet, 850032, China.
Shengjun Liu *National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Wuhan, Hubei, 430070, P.R. China.
Lei TanNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Wuhan, Hubei, 430070, P.R. China.
Yue HuangNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Wuhan, Hubei, 430070, P.R. China.ORCID http://orcid.org/0000-0002-6572-2341
Yuanrong LiQinghai-Tibet Plateau Fruit Trees Scientific Observation Test Station (Ministry of Agriculture and Rural Affairs), Lhasa, Tibet, 850032, China.
Pingcuo GesangQinghai-Tibet Plateau Fruit Trees Scientific Observation Test Station (Ministry of Agriculture and Rural Affairs), Lhasa, Tibet, 850032, China.
Ying HongQinghai-Tibet Plateau Fruit Trees Scientific Observation Test Station (Ministry of Agriculture and Rural Affairs), Lhasa, Tibet, 850032, China.
Xiuxin DengNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Wuhan, Hubei, 430070, P.R. China.ORCID http://orcid.org/0000-0003-4490-4514
Xia WangNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Wuhan, Hubei, 430070, P.R. China. wangxia@mail.hzau.edu.cn.
Qiang XuNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Wuhan, Hubei, 430070, P.R. China. xuqiang@mail.hzau.edu.cn.ORCID http://orcid.org/0000-0003-1786-9696
Wen-Biao JiaoNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Wuhan, Hubei, 430070, P.R. China. jiao@mail.hzau.edu.cn.ORCID http://orcid.org/0000-0001-8355-2959
Xiuli ZengQinghai-Tibet Plateau Fruit Trees Scientific Observation Test Station (Ministry of Agriculture and Rural Affairs), Lhasa, Tibet, 850032, China. zengxiuli@taaas.org.ORCID http://orcid.org/0000-0001-9997-5892

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

P. serrula is widely distributed in Yunnan, Xizang, and Sichuan, and usually grows at high altitudes between 2,600 and 3,900 meters above sea level. In this study, we obtained a high-quality chromosome-level assembly genome of P. serrula using Illumina sequencing, Oxford Nanopore ultra-long sequencing, and Hi-C technology. The genome was 284.5 Mb in length, with a scaffold N50 of 32.4 Mb and 91.9% of the assembly anchored onto 8 pseudochromosomes. BUSCO completeness value of 98.5% demonstrated a high completed genome, and a total of 35,151 protein-coding genes and 47,340 transcripts were annotated. Overall, this genome delivers valuable genetic resources for further phylogenomic studies and provides insights into the genetic architectures underlying high-altitude adaptation.

Indexed as

Chromosomes, PlantGenome, PlantPrunusAltitudeHigh-Throughput Nucleotide SequencingMolecular Sequence Annotation

Identifiers

PMID40128192
PMCPMC11933403

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.