Evidence map›Paper›PMID 40135929›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2026

Lineage labeling with zebrafish hand2 Cre and CreERT2 recombinase CRISPR knock-ins.

Zhitao Ming, Fang Liu, Hannah R Moran, Robert L Lalonde, Megan Adams, Nicole K Restrepo, Parnal Joshi, Stephen C Ekker, Karl J Clark, Iddo Friedberg and 5 more

Abstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Lineage labeling with zebrafish hand2 Cre and CreERT2 recombinase CRISPR knock-ins.Developmental dynamics : an official publication of the American Association of Anatomists · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Zhitao MingDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa, USA.
Fang LiuDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa, USA.
Hannah R MoranDepartment of Pediatrics, Section of Developmental Biology, University of Colorado School of Medicine, Aurora, Colorado, USA.
Robert L LalondeDepartment of Pediatrics, Section of Developmental Biology, University of Colorado School of Medicine, Aurora, Colorado, USA.
Megan AdamsDivision of Gastroenterology, Hepatology and Nutrition, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Nicole K RestrepoDepartment of Pathology and Cell Biology, University of South Florida, Tampa, Florida, USA.
Parnal JoshiDepartment of Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, Iowa, USA.
Stephen C EkkerDepartment of Pediatrics, University of Texas at Austin, Austin, Texas, USA.
Karl J ClarkDepartment of Animal Science, Texas A&M University, College Station, Texas, USA.
Iddo FriedbergDepartment of Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, Iowa, USA.
Saulius SumanasDepartment of Pathology and Cell Biology, University of South Florida, Tampa, Florida, USA.ORCID https://orcid.org/0000-0002-8605-6122
Chunyue YinDivision of Gastroenterology, Hepatology and Nutrition, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Christian MosimannDepartment of Pediatrics, Section of Developmental Biology, University of Colorado School of Medicine, Aurora, Colorado, USA.ORCID https://orcid.org/0000-0002-0749-2576
Jeffrey J EssnerDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa, USA.
Maura McGrailDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa, USA.ORCID https://orcid.org/0000-0001-9308-6189

Funding

In vivo model of microglia inflammasome signaling in neuroinflammationR24OD020166 · OD · IOWA STATE UNIVERSITY · PI CLARK, KARL J, EKKER, STEPHEN CARL · 2016 to 2023
$7.1M
Conditional genetics and precision genome editing resources for ZebrafishR24OD036201 · OD · IOWA STATE UNIVERSITY · PI KARL J CLARK, Stephen Carl Ekker · 2024 to 2026
$3.0M
Novel mechanisms of vasculogenesisR01HL153005 · NHLBI · UNIVERSITY OF SOUTH FLORIDA · PI SUMANAS, SAULIUS · 2021 to 2024
$2.0M
Predoctoral Training in the Genetics of Development, Disease and RegenerationT32GM141742 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI Bruce H Appel, Jeffrey Kyle Moore · 2021 to 2026
$1.9M
Molecular targets in cholestasis caused by bile salt export pump deficiencyR01DK117266 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI YIN, CHUNYUE · 2018 to 2022
$1.7M
Decoding the transcriptional mechanisms of pericardium formationR01HL168097 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI Christian Mosimann · 2024 to 2026
$1.7M
Mechanisms of human appendicular and cardiovascular comorbidities: An analysis of heterogeneity and lineage trajectories of the lateral plate mesodermK99HL168148 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI LALONDE, ROBERT L · 2023 to 2024
$199k
Modeling Progressive Familial Intrahepatic Cholestasis Type I Caused by ATP8B1 deficiencyR03TR004601 · NCATS · CINCINNATI CHILDRENS HOSP MED CTR · PI YIN, CHUNYUE · 2023 to 2023
$161k
Defining the developmental mechanisms of pericardium formationF31HL167580 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI MORAN, HANNAH ROSE · 2023 to 2024
$65k
Children's Hospital ColoradoIowa State University of Science and TechnologyNCATS NIH HHS R03 TR004601NHLBI NIH HHS F31 HL167580NHLBI NIH HHS K99 HL168148NHLBI NIH HHS R01 HL153005NHLBI NIH HHS R01 HL168087NHLBI NIH HHS R01 HL168097NIDDK NIH HHS R01 DK117266NIGMS NIH HHS T32 GM141742NIH HHS R24 OD020166NIH HHS R24 OD036201ORIP NIH HHS R24 OD020166ORIP NIH HHS R24 OD036201PFIC Research Center, Cincinnati Children's Hospital
6 · The paper itself

Abstract

backgroundThe ability to generate endogenous Cre recombinase drivers using CRISPR-Cas9 knock-in technology allows lineage tracing, cell type-specific gene studies, and in vivo validation of inferred developmental trajectories from phenotypic and gene expression analyses. This report describes endogenous zebrafish hand2 Cre and CreERT2 drivers generated with GeneWeld CRISPR-Cas9 precision targeted integration.

resultshand2-2A-cre and hand2-2A-creERT2 knock-ins crossed with ubiquitous loxP-based Switch reporters led to broad labeling in expected mesodermal and neural crest-derived lineages in branchial arches, cardiac, fin, liver, intestine, and mesothelial tissues, as well as enteric neurons. Novel patterns of hand2 lineage tracing appeared in venous blood vessels. CreERT2 induction at 24 h reveals hand2-expressing cells in the 24- to 48-h embryo contribute to the venous and intestinal vasculature. Induction in 3 dpf larvae restricts hand2 lineage labeling to mesoderm-derived components of the branchial arches, heart, liver, and enteric neurons.

conclusionshand2 progenitors from the lateral plate mesoderm and ectoderm contribute to numerous lineages in the developing embryo. At later stages, hand2-expressing cells are restricted to a subset of lineages in the larva. The endogenous hand2 Cre and CreERT2 drivers establish critical new tools to investigate hand2 lineages in zebrafish embryogenesis and larval organogenesis.

Indexed as

Basic Helix-Loop-Helix ProteinsCell LineageIntegrasesZebrafishZebrafish ProteinsAnimalsCRISPR-Cas SystemsGene Expression Regulation, DevelopmentalGene Knock-In TechniquesBasic Helix-Loop-Helix ProteinsCre recombinasehand2 protein, zebrafishIntegrasesZebrafish ProteinsCRISPR‐Cas9GeneWeldHand2 lineagesknock‐inmesodermneural crestorganogenesisprogenitorszebrafish

Identifiers

PMID40135929
PMCPMC12353861

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.