Evidence map›Paper›PMID 40148745›Full record

ArticlePlant, cell & environment2025

Light Quantity Impacts Early Response to Cold and Cold Acclimation in Young Leaves of Arabidopsis.

Markéta Luklová, Marieke Dubois, Michaela Kameniarová, Klára Plačková, Jan Novák, Romana Kopecká, Michal Karady, Jaroslav Pavlů, Jan Skalák, Sunita Jindal and 5 more

Abstract read
In one paragraph

Article in Plant, cell & environment, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Markéta LuklováDepartment of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czech Republic.ORCID https://orcid.org/0000-0003-4948-423X
Marieke DuboisDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-5190-2130
Michaela KameniarováDepartment of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czech Republic.ORCID https://orcid.org/0000-0002-7696-8902
Klára PlačkováDepartment of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czech Republic.ORCID https://orcid.org/0000-0002-9179-0030
Jan NovákDepartment of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czech Republic.ORCID https://orcid.org/0000-0001-6248-5355
Romana KopeckáDepartment of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czech Republic.ORCID http://orcid.org/0000-0002-3870-9352
Michal KaradyLaboratory of Growth Regulators, Institute of Experimental Botany, The Czech Academy of Sciences & Palacký University, Olomouc, Czech Republic.ORCID https://orcid.org/0000-0002-5603-706X
Jaroslav PavlůDepartment of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czech Republic.ORCID https://orcid.org/0000-0002-7855-8907
Jan SkalákDepartment of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czech Republic.ORCID https://orcid.org/0000-0002-0784-499X
Sunita JindalDepartment of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czech Republic.ORCID https://orcid.org/0000-0002-0318-2204
Ljiljana TubićDepartment of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czech Republic.ORCID http://orcid.org/0000-0002-1899-0116
Zainab QuddoosDepartment of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czech Republic.
Ondřej NovákLaboratory of Growth Regulators, Institute of Experimental Botany, The Czech Academy of Sciences & Palacký University, Olomouc, Czech Republic.ORCID https://orcid.org/0000-0003-3452-0154
Dirk InzéDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-3217-8407
Martin ČernýDepartment of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czech Republic.ORCID http://orcid.org/0000-0002-0651-4219

Funding

Funding for this study was provided by the Czech Science Foundation (grant number 20-26232S) and the Ministry of Education, Youth and Sports of the Czech Republic with support from the European Regional Development Fund (grant no. CZ.02.1.01/0.0/0.0/16_019/0000738, project name "Centre for Experimental Plant Biology").
6 · The paper itself

Abstract

Plant reactions to stress vary with development stage and fitness. This study assessed the relationship between light and chilling stress in Arabidopsis acclimation. By analysing the transcriptome and proteome responses of expanding leaves subjected to varying light intensity and cold, 2251 and 2064 early response genes and proteins were identified, respectively. Many of these represent as a yet unknown part of the early response to cold, illustrating a development-dependent response to stress and duality in plant adaptations. While standard light promoted photosynthetic upregulation, plastid maintenance, and increased resilience, low light triggered a unique metabolic shift, prioritizing ribosome biogenesis and lipid metabolism and attenuating the expression of genes associated with plant immunity. The comparison of early response in young leaves with that in expanded ones showed striking differences, suggesting a sacrifice of expanded leaves to support young ones. Validations of selected DEGs in mutant background confirmed a role of HSP90-1, transcription factor FLZ13, and Phospholipase A1 (PLIP) in response to cold, and the PLIP family emerged as crucial in promoting acclimation and freezing stress tolerance. The findings highlight the dynamic mechanisms that enable plants to adapt to challenging environments and pave the way for the development of genetically modified crops with enhanced freezing tolerance.

Indexed as

AcclimatizationArabidopsisCold TemperatureLightPlant LeavesArabidopsis ProteinsGene Expression Regulation, PlantPhotosynthesisProteomeTranscriptomeArabidopsis ProteinsProteomeacclimationfreezing tolerancejasmonic acidleaf developmentlipidomeproteometranscriptome

Identifiers

PMID40148745
PMCPMC12131964

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.