Evidence map›Paper›PMID 40157940›Full record

ArticleNature communications2025

Genome-scale CRISPRi screen identifies pcnB repression conferring improved physiology for overproduction of free fatty acids in Escherichia coli.

Lixia Fang, Xueyan Hao, Jie Fan, Xiaolei Liu, Yaru Chen, Lian Wang, Xiaoying Huang, Hao Song, Yingxiu Cao

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Lixia FangState Key Laboratory of Synthetic Biology, Tianjin University, Tianjin, China.ORCID http://orcid.org/0000-0001-5813-3496
Xueyan HaoState Key Laboratory of Synthetic Biology, Tianjin University, Tianjin, China.
Jie FanState Key Laboratory of Synthetic Biology, Tianjin University, Tianjin, China.
Xiaolei LiuState Key Laboratory of Synthetic Biology, Tianjin University, Tianjin, China.
Yaru ChenState Key Laboratory of Synthetic Biology, Tianjin University, Tianjin, China.
Lian WangState Key Laboratory of Synthetic Biology, Tianjin University, Tianjin, China.
Xiaoying HuangState Key Laboratory of Synthetic Biology, Tianjin University, Tianjin, China.
Hao SongState Key Laboratory of Synthetic Biology, Tianjin University, Tianjin, China.ORCID http://orcid.org/0000-0003-0447-3617
Yingxiu CaoState Key Laboratory of Synthetic Biology, Tianjin University, Tianjin, China. caoyingxiu@tju.edu.cn.ORCID http://orcid.org/0000-0002-8762-8356

Funding

China Postdoctoral Science Foundation 2024T170643National Natural Science Foundation of China (National Science Foundation of China) 22308256National Natural Science Foundation of China (National Science Foundation of China) 22478294
6 · The paper itself

Abstract

Microbial physiology plays a pivotal role in construction of superior microbial cell factories for efficient biosynthesis of desired products. Here we identify that pcnB repression confers improved physiology for overproduction of free fatty acids (FFAs) in Escherichia coli through genome-scale CRISPRi modulation combining fluorescence-activated cell sorting (FACS) and next-generation sequencing (NGS). The repression of pcnB can enhance the stability and abundance of the transcripts of genes involved in the proton-consuming system, thereby supporting global improvements in membrane properties, redox state, and energy level. Based on pcnB repression, further repression of acrD increases FFAs biosynthesis by enhancing FFAs efflux. The engineered strain pcnB

Indexed as

Escherichia coliEscherichia coli ProteinsFatty Acids, NonesterifiedCRISPR-Cas SystemsFermentationGene Expression Regulation, BacterialGenome, BacterialHigh-Throughput Nucleotide SequencingMetabolic EngineeringEscherichia coli ProteinsFatty Acids, Nonesterified

Identifiers

PMID40157940
PMCPMC11954867

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.