Evidence map›Paper›PMID 40167337›Full record

ArticleMolecular ecology2025

Multiple Pathways to Red Carotenoid Coloration: House Finches (Haemorhous mexicanus) Do Not Use CYP2J19 to Produce Red Plumage.

Rebecca E Koch, Christy N Truong, Hannah R Reeb, Brooke H Joski, Geoffrey E Hill, Yufeng Zhang, Matthew B Toomey

Abstract read
In one paragraph

Article in Molecular ecology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rebecca E KochDepartment of Biological Science, University of Tulsa, Tulsa, Oklahoma, USA.ORCID 0000-0002-9068-6231
Christy N TruongDepartment of Biological Science, University of Tulsa, Tulsa, Oklahoma, USA.
Hannah R ReebDepartment of Biological Science, University of Tulsa, Tulsa, Oklahoma, USA.
Brooke H JoskiDepartment of Biological Science, University of Tulsa, Tulsa, Oklahoma, USA.
Geoffrey E HillDepartment of Biological Sciences, Auburn University, Auburn, Alabama, USA.ORCID 0000-0001-8864-6495
Yufeng ZhangCollege of Health Sciences, University of Memphis, Memphis, Tennessee, USA.
Matthew B ToomeyDepartment of Biological Science, University of Tulsa, Tulsa, Oklahoma, USA.

Funding

Directorate for Biological Sciences NSF-IOS-2037735Directorate for Biological Sciences NSF-IOS-2037739Directorate for Biological Sciences NSF-IOS-2037741Directorate for Biological Sciences NSF-IOS-2224556
6 · The paper itself

Abstract

The carotenoid-based colours of birds are a celebrated example of biological diversity and an important system for the study of evolution. Recently, a two-step mechanism, with the enzymes cytochrome P450 2J19 (CYP2J19) and 3-hydroxybutyrate dehydrogenase 1-like (BDH1L), was described for the biosynthesis of red ketocarotenoids from yellow dietary carotenoids in the retina and plumage of birds. A common assumption has been that all birds with ketocarotenoid-based plumage coloration used this CYP2J19/BDH1L mechanism to produce red feathers. We tested this assumption in house finches (Haemorhous mexicanus) by examining the catalytic function of the house finch homologues of these enzymes and tracking their expression in birds growing new feathers. We found that CYP2J19 and BDH1L did not catalyse the production of 3-hydroxy-echinenone (3-OH-echinenone), the primary red plumage pigment of house finches, when provided with common dietary carotenoid substrates. Moreover, gene expression analyses revealed little to no expression of CYP2J19 in liver tissue or growing feather follicles, the putative sites of pigment metabolism in moulting house finches. Finally, although the hepatic mitochondria of house finches have high concentrations of 3-OH-echinenone, observations using fluorescent markers suggest that both CYP2J19 and BDH1L localise to the endomembrane system rather than the mitochondria. We propose that house finches and other birds that deposit 3-OH-echinenone as their primary red plumage pigment use an alternative enzymatic pathway to produce their characteristic red ketocarotenoid-based coloration.

Indexed as

CarotenoidsCytochrome P-450 Enzyme SystemFeathersFinchesPigmentationAnimalsCarotenoidsCytochrome P-450 Enzyme SystemBDH1Lcarotenoid metabolismketocarotenoidornamentationTTC39B

Identifiers

PMID40167337
PMCPMC12010460

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.