Evidence map›Paper›PMID 40174856›Full record

SynthesisFertility and sterility2025

Genetic and genomic insights into male reproductive tract development.

Madison Held, Helen Castillo-Madeen, Katinka A Vigh-Conrad, Kenneth I Aston, Donald F Conrad

Abstract readSystematic Review
In one paragraph

Synthesis in Fertility and sterility, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Madison HeldDivision of Genetics, Oregon National Primate Research Center, Oregon Health and Science University, Beaverton, Oregon.
Helen Castillo-MadeenDivision of Genetics, Oregon National Primate Research Center, Oregon Health and Science University, Beaverton, Oregon.
Katinka A Vigh-ConradDivision of Genetics, Oregon National Primate Research Center, Oregon Health and Science University, Beaverton, Oregon.
Kenneth I AstonAndrology and IVF Laboratory, Department of Surgery (Urology), University of Utah, Salt Lake City, Utah.
Donald F ConradDivision of Genetics, Oregon National Primate Research Center, Oregon Health and Science University, Beaverton, Oregon. Electronic address: conradon@ohsu.edu.

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
Multispecies NHP dGTEx Research CenterU24HG012483 · NHGRI · OREGON HEALTH & SCIENCE UNIVERSITY · PI KRISTIN ARDLIE, DONALD F. CONRAD · 2022 to 2026
$17.0M
Project IIIP50HD096723 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI John C Schimenti · 2019 to 2026
$15.0M
GENOMICS OF SPERMATOGENIC IMPAIRMENTR01HD078641 · NICHD · WASHINGTON UNIVERSITY · PI Kenneth Ivan Aston, DONALD F. CONRAD · 2014 to 2026
$6.3M
NHGRI NIH HHS U24 HG012483NICHD NIH HHS P50 HD096723NICHD NIH HHS R01 HD078641NIH HHS P51 OD011092
6 · The paper itself

Abstract

Genetic and genomic analysis continues to drive important insights into male reproductive tract (MRT) development. Here, we briefly review normal MRT development, highlighting recent discoveries of cell types and cellular processes delivered by single-cell sequencing. We report a systematic review of phenotype terms and genes linked to MRT development, identifying 35 terms from the Human Phenotype Ontology associated with 269 unique genes. A parallel review of mouse data revealed differences in the phenotype terms available and the number and identity of genes linked to MRT defects, indicating opportunities for harmonization of knowledge. We used a published single-cell atlas of the developing testis to characterize the regulation of MRT genes across cell types and stages of fetal testis development. Single-cell RNA sequencing data support the conclusion that Leydig cells and Sertoli cells are the primary testicular cell types expressing MRT genes. Furthermore, we find post-conception weeks 6, 8, and 16 to be the key points of upregulation of testicular MRT genes. New advances, especially in imaging and spatially resolved molecular measurements, provide exciting prospects for MRT research and diagnosis, and we expect rapid progress in the coming years. Continued investigation in this space is essential to understand the genetic basis of MRT development and how MRT defects are related to medical outcomes in adult life.

Indexed as

Genitalia, MaleGenomicsTestisAnimalsGene Expression Regulation, DevelopmentalHumansMaleMicePhenotypeDifferences of sex developmentgeneticsgenomicsmale reproductive tracttestis

Identifiers

PMID40174856
PMCPMC12158639

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.