Evidence map›Paper›PMID 40181149›Full record

ArticleNature chemistry2025

Activity of GPCR-targeted drugs influenced by human gut microbiota metabolism.

Qihao Wu, Deguang Song, Yanyu Zhao, Andrew A Verdegaal, Tayah Turocy, Brianna Duncan-Lowey, Andrew L Goodman, Noah W Palm, Jason M Crawford

Abstract read
In one paragraph

Article in Nature chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Gut microbes · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Gut bacterialGut microbes reports · 2026
    Review
  10. Article
  11. Article
  12. Lipidomics, Microbiota, and IntestinalInternational journal of molecular sciences · 2025
    Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Qihao Wu *Department of Chemistry, Yale University, New Haven, CT, USA.
Deguang Song *Department of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Yanyu ZhaoDepartment of Chemistry, Yale University, New Haven, CT, USA.
Andrew A VerdegaalDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT, USA.
Tayah TurocyDepartment of Chemistry, Yale University, New Haven, CT, USA.ORCID 0000-0002-5197-0264
Brianna Duncan-LoweyDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.ORCID 0000-0001-9078-503X
Andrew L GoodmanDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT, USA. andrew.goodman@yale.edu.ORCID 0000-0001-7599-3471
Noah W PalmDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA. noah.palm@yale.edu.ORCID 0000-0001-7262-9455
Jason M CrawfordDepartment of Chemistry, Yale University, New Haven, CT, USA. jason.crawford@yale.edu.ORCID 0000-0002-7583-1242

Funding

Microbial Chemical Sensing and Host ResponsesRM1GM141649 · NIGMS · YALE UNIVERSITY · PI Jason Michael Crawford, Caroline Helen Johnson · 2021 to 2026
$9.0M
Predoc Training at the Interface Chemistry and BiologyT32GM067543 · NIGMS · YALE UNIVERSITY · PI CRAWFORD, JASON MICHAEL · 2003 to 2022
$7.4M
A forward chemical genetic screen to illuminate the dark matter of the bioactive microbiota metabolomeDP2DK125119 · NIDDK · YALE UNIVERSITY · PI PALM, NOAH WOLCOTT · 2019 to 2019
$2.5M
Understanding the contributions of microbiome-encoded drug metabolizing enzymesR01AT010014 · NCCIH · YALE UNIVERSITY · PI GOODMAN, ANDREW L · 2019 to 2023
$2.1M
Bacterial metabolism of catechol-O-methyltransferase inhibitors alters drug efficacy and toxicityF31DK132941 · NIDDK · YALE UNIVERSITY · PI VERDEGAAL, ANDREW ALBERT · 2023 to 2024
$47k
NCCIH NIH HHS R01 AT010014NIDDK NIH HHS DP2 DK125119NIDDK NIH HHS F31 DK132941NIGMS NIH HHS RM1 GM141649NIGMS NIH HHS T32 GM067543U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) 1RM1GM141649
6 · The paper itself

Abstract

Microbiota-mediated drug metabolism can affect pharmacological efficacy. Here we conducted a systematic comparative metabolomics investigation of drug metabolism modes by evaluating the impacts of human gut commensal bacteria on 127 G-protein-coupled receptor (GPCR)-targeted drugs. For the most extensively metabolized drugs in our screen, we elucidated both conventional and unconventional drug transformations and the corresponding activities of generated metabolites. Comparisons of drug metabolism by a gut microbial community versus individual species revealed both taxon intrinsic and collaborative processes that influenced the activity of the metabolized drugs against target GPCRs. We also observed iloperidone inactivation by generating unconventional metabolites. The human gut commensal bacteria mixture incorporated sulfur in the form of a thiophene motif, whereas Morganella morganii used a cascade reaction to incorporate amino-acid-derived tricyclic systems into the drug metabolites. Our results reveal a broad impact of human gut commensal bacteria on GPCR-targeted drug structures and activities through diverse microbiota-mediated biotransformations.

Indexed as

Gastrointestinal MicrobiomeReceptors, G-Protein-CoupledHumansReceptors, G-Protein-Coupled

Identifiers

PMID40181149
PMCPMC12412589

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.