Evidence map›Paper›PMID 40189159›Full record

ArticleThe Journal of allergy and clinical immunology2025

Early-life wheeze trajectories are associated with distinct asthma transcriptomes later in life.

Kieran J Phelan, Krishna M Roskin, Jeffrey W Burkle, Wan-Chi Chang, Lisa J Martin, Jocelyn M Biagini, Latha Satish, David B Haslam, Daniel Spagna, Seth Jenkins and 21 more

Abstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. TheBMJ open respiratory research · 2026
    Observational
  3. Heterogeneity and molecular mechanisms of early-life wheeze.The Journal of allergy and clinical immunology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Kieran J PhelanDivision of Asthma Research, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio; Medical Scientist Training Program, University of Cincinnati College of Medicine, Cincinnati, Ohio.
Krishna M RoskinDivision of Biomedical Informatics and Division of Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio.
Jeffrey W BurkleDivision of Asthma Research, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Wan-Chi ChangDivision of Asthma Research, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Lisa J MartinDepartment of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio; Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Jocelyn M BiaginiDivision of Asthma Research, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio.
Latha SatishDivision of Asthma Research, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
David B HaslamDepartment of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio.
Daniel SpagnaDivision of Asthma Research, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Seth JenkinsDivision of Asthma Research, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Elsie ParmarDivision of Asthma Research, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Leonard B BacharierDivision of Pediatric Allergy, Immunology and Pulmonary Medicine, Monroe Carell Jr Children's Hospital at Vanderbilt University, Nashville, Tenn.
Tebeb GebretsadikDepartment of Biostatistics, Vanderbilt University Medical Center, Nashville, Tenn.
Michelle GillWashington University School of Medicine, St Louis, Mo.
Diane R GoldDepartment of Environmental Health, Harvard T. H. Chan School of Public Health, Boston, Mass; Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, Mass.
Daniel J JacksonDepartment of Pediatrics, University of Wisconsin School of Medicine and Public Health, Madison, Wis.
Christine C JohnsonDepartment of Public Health Sciences, Henry Ford Health, Detroit, Mich.
Susan V LynchDepartment of Medicine, University of California, San Francisco, Calif.
Kathryn E McCauleyDepartment of Medicine, University of California, San Francisco, Calif.
Chris G McKennanDepartment of Statistics, University of Pittsburgh, Pittsburgh, Pa.
Rachel MillerDivision of Clinical Immunology, Icahn School of Medicine at Mount Sinai, New York, NY.
Carole OberDepartment of Human Genetics, University of Chicago, Chicago, Ill.
Dennis R OwnbyDivision of Allergy and Immunology, Augusta University, Augusta, Ga.
Patrick H RyanDepartment of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio; Division of Biostatistics and Epidemiology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Nathan SchoettlerSection of Pulmonary and Critical Care, Department of Medicine, University of Chicago, Chicago, Ill.
Sweta SinghClinical and Health Informatics Institute, University of Wisconsin School of Medicine and Public Health, Madison, Wis.
Cynthia M VisnessRho, Inc, Federal Research Operations, Durham, NC.
Matthew C AltmanImmunology Division, Benaroya Research Institute Systems, Seattle, Wash; Department of Medicine, University of Washington, Seattle, Wash.
James E GernDepartment of Pediatrics, University of Wisconsin School of Medicine and Public Health, Madison, Wis.
Gurjit K Khurana HersheyDivision of Asthma Research, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio. Electronic address: gurjit.hershey@cchmc.org.
Environmental Influences on Child Health Outcomes–Children’s Respiratory and Environmental Workgroup

Funding

Transplantation GroupUM2AI117870 · NIAID · RHO FEDERAL SYSTEMS DIVISION, INC. · PI DAVID, GLORIA · 2015 to 2023
$208.1M
Inner City Asthma consortium 3 (ICAC3)UM1AI114271 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI GERN, JAMES E., JACKSON, DANIEL J · 2014 to 2021
$79.4M
Wisconsin Infant Study Cohort (WISC) ECHO Pediatric Follow-UpUH3OD023282 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI James E. Gern · 2018 to 2026
$64.8M
RhoFED AA-SCCCU01AI178772 · NIAID · RHO FEDERAL SYSTEMS DIVISION, INC. · PI Gloria David, Cynthia M Visness · 2023 to 2026
$37.2M
TSLP, IL-9-producing mucosal mast cells, and allergic inflammationU19AI070235 · NIAID · CINCINNATI CHILDRENS HOSP MED CTR · PI Gurjit K. Khurana Hershey · 2006 to 2026
$31.3M
Prenatal Exposures and Child Health Outcomes: A Statewide StudyUG3OD023285 · OD · MICHIGAN STATE UNIVERSITY · PI BARONE, CHARLES JAMES, ELLIOTT, MICHAEL R. · 2016 to 2024
$12.9M
Project-003U19AI162310 · NIAID · UNIVERSITY OF CHICAGO · PI Marcelo A. Nobrega, Carole Ober · 2021 to 2026
$10.6M
Pulmonary Development and Disease Pathogenesis Training ProgramT32HL007752 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI Francis Xavier McCormack, Anne-Karina Theresia Perl · 1994 to 2026
$6.3M
Medical Scientist Training ProgramT32GM149200 · NIGMS · UNIVERSITY OF CINCINNATI · PI Gurjit K. Khurana Hershey · 2023 to 2026
$4.0M
Children's Allergy and Asthma Data Repository (CADRE) SupplementU24AI179612 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI James E. Gern · 2024 to 2026
$3.2M
Multi-omics of the Frequent Exacerbator AsthmaticU01AI159087 · NIAID · CINCINNATI CHILDRENS HOSP MED CTR · PI Gurjit K. Khurana Hershey · 2021 to 2026
$3.0M
Epidemiology of multimorbid pediatric atopic and airway diseases and the impact of prenatal maternal environmental exposures and placental epigeneticsUG3OD035518 · OD · HENRY FORD HEALTH SYSTEM · PI EAPEN, AMY, JOHNSON, CHRISTINE C · 2023 to 2024
$1.7M
NHLBI NIH HHS F30 HL172613NHLBI NIH HHS K08 HL153955NHLBI NIH HHS T32 HL007752NIAID NIH HHS HHSN272200900052CNIAID NIH HHS HHSN272201000052INIAID NIH HHS N01 AI025482NIAID NIH HHS N01 AI025496NIAID NIH HHS U01 AI159087NIAID NIH HHS U01 AI178772NIAID NIH HHS U19 AI070235NIAID NIH HHS U19 AI162310NIAID NIH HHS U24 AI179612NIAID NIH HHS UM1 AI114271NIAID NIH HHS UM2 AI117870NIGMS NIH HHS T32 GM149200NIH HHS UG3 OD023285NIH HHS UG3 OD035518NIH HHS UH3 OD023282
6 · The paper itself

Abstract

backgroundEarly childhood wheeze is characterized by heterogeneous trajectories having differential associations with later-life asthma development.

objectiveWe sought to determine how early-life wheeze trajectories impact later life asthma gene expression.

methodsThe Children's Respiratory Environmental Workgroup is a collective of 12 birth cohorts, 7 of which conducted an additional visit with a nasal lavage collected and subjected to bulk RNA-sequencing. Early-life wheeze trajectories were defined using latent class analysis of longitudinal early-life wheezing data. Weighted gene correlation network analysis was used to associate gene expression patterns and current asthma with early-life wheeze trajectories.

resultsWe investigated 743 children (mean age, 17 ± 5.1 years; 360 [48.5%] male). Four patterns of early-life wheeze were identified: infrequent, transient, late-onset, and persistent. Early-life transient wheeze was associated with gene expression patterns related to increased antiviral response, and late-onset wheeze was associated with decreased insulin signaling and glucose metabolism. Early-life persistent wheeze was associated with gene expression modules of type 2 inflammation and epithelial development, but these modules did not distinguish those with current asthma. Children who had persistent wheeze in early life and current asthma displayed a unique increase in expression of genes enriched for neuronal processes and ciliated epithelial function compared with those without asthma.

conclusionsEarly-life longitudinal wheeze trajectories are associated with specific asthma transcriptomes later in life. These data suggest that early-life asthma prevention strategies may be most beneficial when tailored to the specific wheeze pattern.

Indexed as

AsthmaRespiratory SoundsTranscriptomeAdolescentChildChild, PreschoolFemaleHumansLongitudinal StudiesMaleasthmapediatricstranscriptomicsWheeze

Identifiers

PMID40189159
PMCPMC12354082

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.