Evidence map›Paper›PMID 40201199›Full record

ArticleBlood science (Baltimore, Md.)2025

Integrated bioinformatics analysis to develop diagnostic models for malignant transformation of chronic proliferative diseases.

Hua Liu, Sheng Lin, Pei-Xuan Chen, Juan Min, Xia-Yang Liu, Ting Guan, Chao-Ying Yang, Xiao-Juan Xiao, De-Hui Xiong, Sheng-Jie Sun and 5 more

Abstract read
In one paragraph

Article in Blood science (Baltimore, Md.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Hua LiuShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.
Sheng LinShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.
Pei-Xuan ChenShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.
Juan MinShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.
Xia-Yang LiuShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.
Ting GuanShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.
Chao-Ying YangShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.
Xiao-Juan XiaoShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.
De-Hui XiongShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.
Sheng-Jie SunShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.
Ling NieDepartment of Hematology, Xiangya Hospital, Central South University, Changsha 410078, China.
Han GongShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.
Xu-Sheng WuShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.
Xiao-Feng HeShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.
Jing LiuShenzhen Health Development Research and Data Management Center, Shenzhen 518028, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The combined analysis of dual diseases can provide new insights into pathogenic mechanisms, identify novel biomarkers, and develop targeted therapeutic strategies. Polycythemia vera (PV) is a chronic myeloproliferative neoplasm associated with a risk of acute myeloid leukemia (AML) transformation. However, the chronic nature of disease transformation complicates longitudinal high-throughput sequencing studies of patients with PV before and after AML transformation. This study aimed to develop a diagnostic model for malignant transformation of chronic proliferative diseases, addressing the challenges of early detection and intervention. Integrated public datasets of PV and AML were analyzed to identify differentially expressed genes (DEGs) and construct a weighted correlation network. Machine-learning algorithms screen genes for potential biomarkers, leading to the development of diagnostic models. Clinical specimens were collected to validate gene expression. cMAP and molecular docking predicted potential drugs. In vitro experiments were performed to assess drug efficacy in PV and AML cells. CIBERSORT and single-cell RNA-sequencing (scRNA-seq) analyses were used to explore the impact of hub genes on the tumor microenvironment. We identified 24 genes shared between PV and AML, which were enriched in immune-related pathways. Lactoferrin (LTF) and G protein-coupled receptor 65 (GPR65) were integrated into a nomogram with a robust predictive power. The predicted drug vemurafenib inhibited proliferation and increased apoptosis in PV and AML cells. TME analysis has linked these biomarkers to macrophages. Clinical samples were used to confirm LTF and GPR65 expression levels. We identified shared genes between PV and AML and developed a diagnostic nomogram that offers a novel avenue for the diagnosis and clinical management of AML-related PV.

Indexed as

Acute myeloid leukemiaBioinformatics analysisBiomarkerHub genesMachine learningPolycythemia vera

Identifiers

PMID40201199
PMCPMC11977743

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.