Evidence map›Paper›PMID 40202833›Full record

ArticleMolecular biology of the cell2025

Cell confluency affects p53 dynamics in response to DNA damage.

Alina Simerzin, Emily E Ackerman, Kotaro Fujimaki, Rainer H Kohler, Yoshiko Iwamoto, Mathias S Heltberg, Ashwini Jambhekar, Ralph Weissleder, Galit Lahav

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Quantifying single-cell responses to irradiation in 3D.Frontiers in bioengineering and biotechnology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alina SimerzinDepartment of Systems Biology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115.
Emily E AckermanDepartment of Systems Biology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115.
Kotaro FujimakiDepartment of Systems Biology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115.
Rainer H KohlerCenter for Systems Biology, Massachusetts General Hospital, Boston, MA 02114.
Yoshiko IwamotoCenter for Systems Biology, Massachusetts General Hospital, Boston, MA 02114.
Mathias S HeltbergDepartment of Systems Biology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115.
Ashwini JambhekarDepartment of Systems Biology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115.
Ralph WeisslederCenter for Systems Biology, Massachusetts General Hospital, Boston, MA 02114.
Galit LahavDepartment of Systems Biology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115.ORCID 0000-0003-4758-6427

Funding

Dynamics, Regulation and Function of p53 in Single CellsR35GM139572 · NIGMS · HARVARD MEDICAL SCHOOL · PI Galit Lahav · 2021 to 2026
$4.7M
Temporal analysis of the GBM tumor microenvironment during myeloid cell activating therapyR01CA281735 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI RALPH WEISSLEDER, MD, PhD · 2023 to 2026
$2.3M
Bioorthogonal probe development for highly parallel in vivo imagingR33CA277820 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI WEISSLEDER, MD, PHD, RALPH · 2023 to 2025
$1.2M
NCI NIH HHS R01 CA281735NCI NIH HHS R33 CA277820NIGMS NIH HHS R35 GM139572
6 · The paper itself

Abstract

The tumor suppressor protein p53 plays a key role in the cellular response to DNA damage. In response to DNA double-strand breaks (DSB), cultured cells exhibit oscillations of p53 levels, which impact gene expression and cell fate. The dynamics of p53 in vivo have only been studied in fixed tissues or using reporters for p53's transcriptional activity. Here we established breast tumors expressing a fluorescent reporter for p53 levels and employed intravital imaging to quantify its dynamics in response to DSB in vivo. Our findings revealed large heterogeneity among individual cells, with most cells exhibiting a single prolonged pulse. We then tested how p53 dynamics might change under high cell confluency, one factor that differs between cell culture and tissues. We revealed that highly confluent cultured breast cancer cells also show one broad p53 pulse instead of oscillations. Through mathematical modeling, sensitivity analysis, and live-cell imaging, we identified low levels of the phosphatase Wip1, a transcriptional target and negative regulator of p53, as a key contributor to these dynamics. Because high cell confluency better reflects the microenvironment of tissues, the impact of cell confluency on p53 dynamics may have important consequences for cancerous tissues responding to DNA damage-inducing therapies.

Indexed as

DNA DamageTumor Suppressor Protein p53AnimalsBreast NeoplasmsCell Line, TumorDNA Breaks, Double-StrandedFemaleHumansMiceProtein Phosphatase 2CPPM1D protein, humanProtein Phosphatase 2CTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID40202833
PMCPMC12206509

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.