Evidence map›Paper›PMID 40229276›Full record

ArticleNature communications2025

H3.1K27M-induced misregulation of the TONSOKU-H3.1 pathway causes genomic instability.

Wenxin Yuan, Yi-Chun Huang, Chantal LeBlanc, Axel Poulet, Francisca N De Luna Vitorino, Devisree Valsakumar, Renee Dean, Benjamin A Garcia, Josien C van Wolfswinkel, Philipp Voigt and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Wenxin Yuan *Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, Yale University, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-5778-2769
Yi-Chun Huang *Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, Yale University, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-7487-4443
Chantal LeBlancDepartment of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, Yale University, New Haven, CT, USA.
Axel PouletDepartment of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, Yale University, New Haven, CT, USA.
Francisca N De Luna VitorinoDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0001-8543-2299
Devisree ValsakumarWellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0002-8279-6369
Renee DeanDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St Louis, MO, USA.
Benjamin A GarciaDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0003-3596-4750
Josien C van WolfswinkelDepartment of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, Yale University, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-4221-3218
Philipp VoigtEpigenetics Programme, Babraham Institute, Cambridge, UK.ORCID http://orcid.org/0000-0003-4366-0490
Yannick JacobDepartment of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, Yale University, New Haven, CT, USA. yannick.jacob@yale.edu.ORCID http://orcid.org/0000-0003-4741-0755

Funding

Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI Eric P. Winer · 1985 to 2026
$85.0M
Shared Resources Core 2: Quantitative Proteomics CoreP01CA196539 · NCI · ROCKEFELLER UNIVERSITY · PI YOUNG, MICHAEL WARREN · 2015 to 2024
$17.6M
Understanding the roles of histone H3 variants in promoting genomic and epigenomic stability during DNA replication and agingR35GM128661 · NIGMS · YALE UNIVERSITY · PI YANNICK JACOB · 2018 to 2026
$4.0M
Chromatin Biology of the African TrypanosomeR01AI165840 · NIAID · THOMAS JEFFERSON UNIVERSITY · PI DEBLER, ERIK · 2022 to 2025
$2.8M
Role of transposon regulation in the negligible senescence of S. mediterraneaR01AG078926 · NIA · YALE UNIVERSITY · PI Josephina C van Wolfswinkel · 2022 to 2026
$2.0M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysisS10OD030363 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2022 to 2022
$1.2M
NCI NIH HHS P01 CA196539NCI NIH HHS P30 CA016359NIAID NIH HHS R01 AI165840NIA NIH HHS R01 AG078926NIGMS NIH HHS R35 GM128661NIH HHS S10 OD030363U.S. Department of Health & Human Services | National Institutes of Health (NIH) 1S10OD030363-01A1U.S. Department of Health & Human Services | National Institutes of Health (NIH) CA196539U.S. Department of Health & Human Services | National Institutes of Health (NIH) P30CA016359U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01AG078926U.S. Department of Health & Human Services | National Institutes of Health (NIH) R35GM128661Wellcome TrustWellcome Trust (Wellcome) 104175/Z/14/Z
6 · The paper itself

Abstract

The oncomutation lysine 27-to-methionine in histone H3 (H3K27M) is frequently identified in tumors of patients with diffuse midline glioma-H3K27 altered (DMG-H3K27a). H3K27M inhibits the deposition of the histone mark H3K27me3, which affects the maintenance of transcriptional programs and cell identity. Cells expressing H3K27M are also characterized by defects in genome integrity, but the mechanisms linking expression of the oncohistone to DNA damage remain mostly unknown. In this study, we demonstrate that expression of H3.1K27M in the model plant Arabidopsis thaliana interferes with post-replicative chromatin maturation mediated by the H3.1K27 methyltransferases ATXR5 and ATXR6. As a result, H3.1 variants on nascent chromatin remain unmethylated at K27 (H3.1K27me0), leading to ectopic activity of TONSOKU (TSK/TONSL), which induces DNA damage and genomic alterations. Elimination of TSK activity suppresses the genome stability defects associated with H3.1K27M expression, while inactivation of specific DNA repair pathways prevents survival of H3.1K27M-expressing plants. Overall, our results suggest that H3.1K27M disrupts the chromatin-based mechanisms regulating TSK activity, which causes genomic instability and may contribute to the etiology of DMG-H3K27a.

Indexed as

ArabidopsisArabidopsis ProteinsGenomic InstabilityHistonesChromatinDNA DamageDNA RepairGene Expression Regulation, PlantLysineMethyltransferasesPlants, Genetically ModifiedArabidopsis ProteinsAT1G52740 protein, ArabidopsisATXR5 protein, ArabidopsisATXR6 protein, ArabidopsisChromatinHistonesLysineMethyltransferases

Identifiers

PMID40229276
PMCPMC11997104

What Socratic holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.