Evidence map›Paper›PMID 40233242›Full record

ArticleBioinformatics (Oxford, England)2025

GSLab: open-source platform for advanced phasor analysis in fluorescence microscopy.

Alexander Vallmitjana, Belén Torrado, Amanda F Durkin, Alexander Dvornikov, Navid Rajil, Suman Ranjit, Mihaela Balu

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
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  3. VPS13 has an important role in female germline development in Arabidopsis.The Plant journal : for cell and molecular biology · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Alexander VallmitjanaBeckman Laser Institute and Medical Clinic, University of California, Irvine, CA, 92612, United States.ORCID 0000-0002-7149-9385
Belén TorradoBeckman Laser Institute and Medical Clinic, University of California, Irvine, CA, 92612, United States.ORCID 0000-0002-0679-3422
Amanda F DurkinBeckman Laser Institute and Medical Clinic, University of California, Irvine, CA, 92612, United States.ORCID 0000-0001-9880-7651
Alexander DvornikovBeckman Laser Institute and Medical Clinic, University of California, Irvine, CA, 92612, United States.
Navid RajilBeckman Laser Institute and Medical Clinic, University of California, Irvine, CA, 92612, United States.ORCID 0000-0002-6898-2544
Suman RanjitBeckman Laser Institute and Medical Clinic, University of California, Irvine, CA, 92612, United States.ORCID 0000-0003-3058-6332
Mihaela BaluBeckman Laser Institute and Medical Clinic, University of California, Irvine, CA, 92612, United States.ORCID 0000-0002-8018-5134

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Melanie Funes · 1994 to 2026
$57.9M
UCI P30 Skin Center Systems Biology CoreP30AR075047 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI ANDERSEN, BOGI, GANESAN, ANAND K · 2019 to 2025
$5.1M
Development of a fast scanning, extended field-of-view multiphoton microscope for clinical skin imagingR01EB026705 · NIBIB · UNIVERSITY OF CALIFORNIA-IRVINE · PI Mihaela Balu, Anand K Ganesan · 2018 to 2026
$4.2M
Fast, large area, multiphoton exoscope (FLAME) for improving early detection of melanomaR01CA259019 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI BALU, MIHAELA, KELLY, KRISTEN M · 2022 to 2025
$3.1M
In vivo label free optical imaging of immune cells in human skinR21AR082648 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI BALU, MIHAELA, GANESAN, ANAND K · 2023 to 2024
$374k
Department of Defense HT94252311027NCI NIH HHS P30 CA062203NCI NIH HHS R01 CA259019NCI NIH HHS R01CA259019NIAMS NIH HHS P30 AR075047NIAMS NIH HHS R21 AR082648NIAMS NIH HHS R21AR082648NIBIB NIH HHS R01 EB026705NIBIB NIH HHS R01EB026705
6 · The paper itself

Abstract

summaryGSLab addresses the need for effective image analysis tools in fluorescence microscopy by providing an open-source platform that enhances traditional phasor analysis with advanced features. Key capabilities include machine learning-based clustering, real-time monitoring, and quantitative unmixing of fluorescent species. Designed for both commercial and custom systems, GSLab provides researchers with comprehensive lifetime and spectral phasor image analysis tools to tackle complex biological problems. AVAILABILITY AND IMPLEMENTATION: The software is written as a MATLAB app. It is available for download at: https://doi.org/10.6084/m9.figshare.27921966. Example files and tutorials are also available: https://doi.org/10.6084/m9.figshare.28067108. For developers who wish to contribute please use: https://github.com/AlexVallmitjana/GSLab. A compiled Windows installer (does not require MATLAB) is available at: https://doi.org/10.6084/m9.figshare.28655276.

Indexed as

Image Processing, Computer-AssistedSoftwareHumansMachine LearningMicroscopy, Fluorescence

Identifiers

PMID40233242
PMCPMC12034383

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.