Evidence map›Paper›PMID 40234696›Full record

ArticleScientific reports2025

Genomic characterization of Leishmania (V.) braziliensis associated with antimony therapeutic failure and variable in vitro tolerance to amphotericin B.

Laura Natalia Gonzalez-Garcia, Aura María Rodríguez-Guzmán, Carolina M Vargas-León, Samanda Aponte, Liliana A Bonilla-Valbuena, J Manuel Matiz-González, Ana M Clavijo-Vanegas, Germán Andrés Duarte-Olaya, Catherine Aguilar-Buitrago, Daniel Alfonso Urrea and 2 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Unraveling the Genome Diversity ofLife (Basel, Switzerland) · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Laura Natalia Gonzalez-GarciaSystems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia.
Aura María Rodríguez-GuzmánLaboratorio de Investigaciones en Parasitología Tropical (LIPT), Universidad del Tolima, Ibagué, Colombia.
Carolina M Vargas-LeónDepartamento de Salud Pública, Facultad de Medicina, Universidad Nacional de Colombia - Sede Bogotá, Bogotá, Colombia.
Samanda AponteDepartamento de Salud Pública, Facultad de Medicina, Universidad Nacional de Colombia - Sede Bogotá, Bogotá, Colombia.
Liliana A Bonilla-ValbuenaDepartamento de Salud Pública, Facultad de Medicina, Universidad Nacional de Colombia - Sede Bogotá, Bogotá, Colombia.
J Manuel Matiz-GonzálezDepartamento de Salud Pública, Facultad de Medicina, Universidad Nacional de Colombia - Sede Bogotá, Bogotá, Colombia.
Ana M Clavijo-VanegasDepartamento de Salud Pública, Facultad de Medicina, Universidad Nacional de Colombia - Sede Bogotá, Bogotá, Colombia.
Germán Andrés Duarte-OlayaLaboratorio de Investigaciones en Parasitología Tropical (LIPT), Universidad del Tolima, Ibagué, Colombia.
Catherine Aguilar-BuitragoDepartamento de Salud Pública, Facultad de Medicina, Universidad Nacional de Colombia - Sede Bogotá, Bogotá, Colombia.
Daniel Alfonso UrreaLaboratorio de Investigaciones en Parasitología Tropical (LIPT), Universidad del Tolima, Ibagué, Colombia.
Jorge DuitamaSystems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia.
Maria C EcheverryDepartamento de Salud Pública, Facultad de Medicina, Universidad Nacional de Colombia - Sede Bogotá, Bogotá, Colombia. mcecheverryg@unal.edu.co.

Funding

Ministerio de Ciencia ,Tecnología e inovación, Colombia 71090-Contract 80740-441-2020
6 · The paper itself

Abstract

Leishmaniasis, a vector-borne disease caused by protozoa from the Leishmania genus, presents a wide range of clinical manifestations in humans and varying responses to treatments. The main clinical presentations correspond with visceral leishmaniasis (VL), cutaneous leishmaniasis (CL), and mucosal leishmaniasis (ML). Amphotericin B (AmB) is a second-line therapeutic option in all forms of leishmaniasis with treatment failure or contraindication for Antimony derivates (SbV) therapy and in geographical regions with a high prevalence of SbV-resistant parasites. This study delves into the genomic features of thirteen L. (V.) braziliensis clinical isolates from CL patients who experienced therapeutic failure to SbV treatment. The isolates were categorized based on their AmB in vitro susceptibility in the amastigote stage, the intracellular parasitic form found in the vertebrate host. The whole genome sequences of the isolates were analyzed and compared with the reference genomes of L. (V.) braziliensis (MHOM/BR/75/M2904 and M2903). The average number of heterozygous SNPs in clinical isolates is at least 75% higher than the reference genomes, and the allele dosages suggest an overall ploidy of two, except in chromosome 31. The main mutations associated with AmB resistance previously reported in experimental cell lines from L. (L.) infantum, L. (L.) mexicana, and L. (L.) donovani were not found in this study. However, there were found mutations referred by other authors in parasites resistant to antileishmanial drugs in proteins such as GP63 (leishmanolysin), NADH-ubiquinone oxidoreductase- ESSS subunit- (putative), quinonoid dihydropteridine reductase, 20s proteasome beta 7 subunit- (putative), biopterin transporter- (putative), and common hypothetical proteins. CNV analysis revealed that the isolates most tolerant to AmB present duplications of genomic regions encompassing genes involved in N-Glycan biosynthesis and biopterin/folate transport and metabolism. Therefore, the present study uncovers previously undescribed metabolic pathways that could be involved in the natural AmB tolerance in Leishmania, which need to be functionally evaluated. These findings highlight the need for further drug response studies in field isolates.

Indexed as

Amphotericin BBiopterinCutaneous leishmaniasisDolichol phosphate mannose synthaseGenomeLeishmania braziliensisResistance

Identifiers

PMID40234696
PMCPMC12000620

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.