Evidence map›Paper›PMID 40244172›Full record

ArticleThe Journal of experimental medicine2025

Role of PRC2 in the stochastic expression of Aire target genes and development of mimetic cells in the thymus.

Minoru Matsumoto, Masaki Yoshida, Takeshi Oya, Koichi Tsuneyama, Mitsuru Matsumoto, Hideyuki Yoshida

Abstract read
In one paragraph

Article in The Journal of experimental medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Minoru Matsumoto *Department of Molecular Pathology, Tokushima University Graduate School of Biomedical Sciences, Tokushima, Japan.ORCID 0000-0002-1955-6821
Masaki Yoshida *YCI Laboratory for Immunological Transcriptomics, RIKEN Center for Integrative Medical Science , Yokohama, Japan.ORCID 0009-0002-2083-6318
Takeshi OyaDepartment of Molecular Pathology, Tokushima University Graduate School of Biomedical Sciences, Tokushima, Japan.ORCID 0009-0009-5831-8875
Koichi TsuneyamaDepartment of Pathology and Laboratory Medicine, Tokushima University Graduate School of Biomedical Sciences, Tokushima, Japan.ORCID 0000-0002-0670-9868
Mitsuru Matsumoto *Division of Molecular Immunology, Institute for Enzyme Research, Tokushima University, Tokushima, Japan.ORCID 0000-0003-3844-8110
Hideyuki Yoshida *YCI Laboratory for Immunological Transcriptomics, RIKEN Center for Integrative Medical Science , Yokohama, Japan.ORCID 0000-0001-6820-9060

Funding

Japan Society for the Promotion of Science 23K14478
6 · The paper itself

Abstract

The transcriptional targets of Aire and the mechanisms controlling their expression in medullary thymic epithelial cells (mTECs) need to be clarified to understand Aire's tolerogenic function. By using a multi-omics single-cell approach coupled with deep scRNA-seq, we examined how Aire controls the transcription of a wide variety of genes in a small fraction of Aire-expressing cells. We found that chromatin repression by PRC2 is an important step for Aire to achieve stochastic gene expression. Aire unleashed the silenced chromatin configuration caused by PRC2, thereby increasing the expression of its functional targets. Besides this preconditioning for Aire's gene induction, we demonstrated that PRC2 also controls the composition of mTECs that mimic the developmental trait of peripheral tissues, i.e., mimetic cells. Of note, this action of PRC2 was independent of Aire and it was more apparent than Aire. Thus, our study uncovered the essential role of polycomb complex for Aire-mediated promiscuous gene expression and the development of mimetic cells.

Indexed as

Gene Expression RegulationPolycomb Repressive Complex 2Thymus GlandTranscription FactorsAIRE ProteinAnimalsChromatinEpithelial CellsMiceMice, Inbred C57BLStochastic ProcessesAIRE ProteinChromatinPolycomb Repressive Complex 2Transcription Factors

Identifiers

PMID40244172
PMCPMC12005117

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.