Evidence map›Paper›PMID 40247113›Full record

ArticleThe EMBO journal2025

Quantitative measures of clock protein dynamics in the mouse suprachiasmatic nucleus extends the circadian time-keeping model.

Nicola J Smyllie, Alex A Koch, Antony D Adamson, Andrew P Patton, Adam Johnson, James S Bagnall, Olivia Johnson, Qing-Jun Meng, Andrew S I Loudon, Michael H Hastings

Abstract read
In one paragraph

Article in The EMBO journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Circadian Behavioral and Bioluminescence Rhythms in theJournal of biological rhythms · 2026
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nicola J SmyllieNeurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK. nsmyllie@mrc-lmb.cam.ac.uk.ORCID http://orcid.org/0000-0002-6324-1421
Alex A KochFaculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0002-0592-331X
Antony D AdamsonFaculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0002-5408-0013
Andrew P PattonNeurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK.ORCID http://orcid.org/0000-0003-2666-4254
Adam JohnsonFaculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0009-0002-3805-4883
James S BagnallFaculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0003-1735-5855
Olivia JohnsonNeurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK.
Qing-Jun MengFaculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0002-9426-8336
Andrew S I LoudonFaculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0003-3648-445X
Michael H HastingsNeurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK. mha@mrc-lmb.cam.ac.uk.ORCID http://orcid.org/0000-0001-8576-6651

Funding

UKRI | Biotechnology and Biological Sciences Research Council (BBSRC) BB/P017347-811 /1UKRI | Biotechnology and Biological Sciences Research Council (BBSRC) BB/P017355/1UKRI | Medical Research Council (MRC) MC_U105170643
6 · The paper itself

Abstract

The suprachiasmatic nucleus (SCN) synchronises circadian rhythmicity (~24 h) across the body. The SCN cell-autonomous clock is modelled qualitatively as a transcriptional-translational feedback loop (TTFL), with heteromeric complexes of transcriptional activator and repressor proteins driving cyclical gene expression. How these proteins really behave within the SCN, individually and in relation to each other, is poorly understood. Imaging SCN slices from a novel array of knock-in reporter mice, we quantify the dynamic behaviours of combined repressors PERIOD2 (PER2) and CRYPTOCHROME1 (CRY1), and activator BMAL1. We reveal a spectrum of protein-specific intracellular and spatiotemporal behaviours that run counter to the qualitative TTFL model. We also show that PER and CRY1 exert independent actions on TTFL oscillations, and that their individual stabilities play a critical role in SCN circadian dynamics. These results reveal a rich and unanticipated complexity in the dynamic behaviours and functions of endogenous circadian proteins, prompting re-appraisal of current transcriptional-translational feedback loop models of the suprachiasmatic nucleus.

Indexed as

Circadian RhythmCLOCK ProteinsCryptochromesPeriod Circadian ProteinsSuprachiasmatic NucleusAnimalsARNTL Transcription FactorsGene Expression RegulationGene Knock-In TechniquesMaleMiceMice, Inbred C57BLARNTL Transcription FactorsBmal1 protein, mouseCLOCK ProteinsCry1 protein, mouseCryptochromesPer2 protein, mousePeriod Circadian ProteinsCRY1E-boxPER2Suprachiasmatic NucleusTTFL

Identifiers

PMID40247113
PMCPMC12218236

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.