Evidence map›Paper›PMID 40247127›Full record

ArticleMolecular psychiatry2025

Epigenetic and genetic profiling of comorbidity patterns among substance dependence diagnoses.

Gita A Pathak, Robert H Pietrzak, AnnMarie Lacobelle, Cassie Overstreet, Frank R Wendt, Joseph D Deak, Eleni Friligkou, Yaira Z Nunez, Janitza L Montalvo-Ortiz, Daniel F Levey and 3 more

Abstract read
In one paragraph

Article in Molecular psychiatry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Gita A PathakDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.
Robert H PietrzakDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.
AnnMarie LacobelleDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.
Cassie OverstreetDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.
Frank R WendtDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.
Joseph D DeakDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-0540-6080
Eleni FriligkouDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0009-0003-3682-0991
Yaira Z NunezDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.
Janitza L Montalvo-OrtizDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-7657-8365
Daniel F LeveyDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-8431-9569
Henry R KranzlerCenter for Studies of Addiction, University of Pennsylvania Perelman School of Medicine and the Mental Illness Research, Education and Clinical Center, Crescenz VAMC, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-1018-0450
Joel GelernterDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-4067-1859
Renato PolimantiDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA. renato.polimanti@yale.edu.ORCID http://orcid.org/0000-0003-0745-6046

Funding

RESEARCH TRAINING - BIOLOGICAL SCIENCEST32MH014276 · NIMH · YALE UNIVERSITY · PI Marina R Picciotto · 1985 to 2026
$7.2M
Methamphetamine and Other Substance Use Disorder Genetics in ThailandR01DA037974 · NIDA · YALE UNIVERSITY · PI JOEL GELERNTER, Marc N Potenza · 2015 to 2026
$6.7M
Leveraging genomic data to dissect the association of internalizing disorders with the risk, onset, and vulnerability of COVID-19RF1MH132337 · NIMH · YALE UNIVERSITY · PI POLIMANTI, RENATO · 2022 to 2022
$3.7M
Genetic Basis of the Risk and Consequences of Cannabis Exposure in HumansR01DA058862 · NIDA · YALE UNIVERSITY · PI DEEPAK Cyril D'SOUZA, JOEL GELERNTER · 2023 to 2026
$2.6M
Investigating the Systems Genetics of the Patterns of Polysubstance Abuse and AddictionR33DA047527 · NIDA · YALE UNIVERSITY · PI POLIMANTI, RENATO · 2021 to 2023
$2.0M
Using novel data sources across genetic, biological, and social domains to refine genome-wide investigations of substance use disordersK01DA058807 · NIDA · YALE UNIVERSITY · PI Joseph D. Deak · 2024 to 2026
$543k
Integrative Epigenomic Mapping of Co-Morbid OUD and PTSD SupplementR21DA050160 · NIDA · YALE UNIVERSITY · PI MONTALVO-ORTIZ, JANITZA LIZ · 2020 to 2021
$433k
Multi-modal intersection of depression and genetic liability to Alzheimers diseaseK99AG078503 · NIA · YALE UNIVERSITY · PI PATHAK, GITA A · 2022 to 2023
$203k
BLRD VA I01 BX004820BLRD VA IK2 BX005058CSRD VA I01 CX001849CSRD VA IK2 CX002095NIA NIH HHS K99 AG078503NIDA NIH HHS K01 DA058807NIDA NIH HHS R01 DA037974NIDA NIH HHS R01 DA058862NIDA NIH HHS R21 DA050160NIDA NIH HHS R33 DA047527NIMH NIH HHS RF1 MH132337NIMH NIH HHS T32 MH014276
6 · The paper itself

Abstract

This study investigated the genetic and epigenetic mechanisms underlying the comorbidity of five substance dependence diagnoses (SDs; alcohol, AD; cannabis, CaD; cocaine, CoD; opioid, OD; tobacco, TD). A latent class analysis (LCA) was performed on 22,668 individuals from six cohorts to identify comorbid DSM-IV SD patterns. In subsets of this sample, we tested SD-latent classes with respect to polygenic overlap of psychiatric and psychosocial traits in 7659 individuals of European descent and epigenome-wide changes in 886 individuals of African, European, and Admixed-American descents. The LCA identified four latent classes related to SD comorbidities: AD + TD, CoD + TD, AD + CoD + OD + TD (i.e., polysubstance addiction, PSU), and TD. In the epigenome-wide association analysis, SPATA4 cg02833127 was associated with CoD + TD, AD + TD, and PSU latent classes. AD + TD latent class was also associated with CpG sites located on ARID1B, NOTCH1, SERTAD4, and SIN3B, while additional epigenome-wide significant associations with CoD + TD latent class were observed in ANO6 and MOV10 genes. PSU-latent class was also associated with a differentially methylated region in LDB1. We also observed shared polygenic score (PGS) associations for PSU, AD + TD, and CoD + TD latent classes (i.e., attention-deficit hyperactivity disorder, anxiety, educational attainment, and schizophrenia PGS). In contrast, TD-latent class was exclusively associated with posttraumatic stress disorder-PGS. Other specific associations were observed for PSU-latent class (subjective wellbeing-PGS and neuroticism-PGS) and AD + TD-latent class (bipolar disorder-PGS). In conclusion, we identified shared and unique genetic and epigenetic mechanisms underlying SD comorbidity patterns. These findings highlight the importance of modeling the co-occurrence of SD diagnoses when investigating the molecular basis of addiction-related traits.

Indexed as

Epigenesis, GeneticEthnicityRacial GroupsSubstance-Related DisordersAdultCohort StudiesComorbidityDNA MethylationEpigenomicsFemaleGenome-Wide Association StudyHumansLatent Class AnalysisMaleMental DisordersMiddle Aged

Identifiers

PMID40247127
PMCPMC12343199

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.