Evidence map›Paper›PMID 40249505›Full record

ArticleWorld journal of urology2025

Lipidomic analysis coupled with machine learning identifies unique urinary lipid signatures in patients with interstitial cystitis/bladder pain syndrome.

Takuya Iwaki, Makoto Kurano, Masahiko Sumitani, Aya Niimi, Akira Nomiya, Jun Kamei, Satoru Taguchi, Yuta Yamada, Yusuke Sato, Masaki Nakamura and 6 more

Abstract read
In one paragraph

Article in World journal of urology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Takuya IwakiDepartment of Urology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Makoto KuranoDepartment of Clinical Laboratory Medicine, The University of Tokyo, Tokyo, Japan. kurano-tky@g.ecc.u-tokyo.ac.jp.
Masahiko SumitaniDepartment of Pain and Palliative Medicine, The University of Tokyo Hospital, Tokyo, Japan.
Aya NiimiDepartment of Urology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Akira NomiyaDepartment of Urology, Japan Organization of Occupational Health and Safety, Kanto Rosai Hospital, Kanagawa, Japan.
Jun KameiDepartment of Urology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Satoru TaguchiDepartment of Urology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Yuta YamadaDepartment of Urology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Yusuke SatoDepartment of Urology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Masaki NakamuraDepartment of Urology, NTT Medical Center Tokyo, Tokyo, Japan.
Daisuke YamadaDepartment of Urology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Tomonori MinagawaDepartment of Urology, Shinshu University School of Medicine, Nagano, Japan.
Hiroshi FukuharaDepartment of Urology, Kyorin University School of Medicine, Tokyo, Japan.
Haruki KumeDepartment of Urology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Yukio HommaDepartment of Interstitial Cystitis Medicine, Kyorin University School of Medicine, Tokyo, Japan.
Yoshiyuki AkiyamaDepartment of Urology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan. yoshiyuki-akiyama@shinshu-u.ac.jp.ORCID https://orcid.org/0000-0003-1439-5640

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeTo identify biomarkers for diagnosis and classification of interstitial cystitis/bladder pain syndrome (IC/BPS) by urinary lipidomics coupled with machine learning.

methodsUrine samples from 138 patients with IC/BPS, including 116 with Hunner lesion (HL) and 22 with no HL, and 71 controls were assessed by lipid chromatography-tandem mass spectrometry. Single and paired lipid analyses of differentially expressed lipids in each group were conducted to assess their diagnostic ability. Machine learning models were constructed based on the identified urinary lipids and patient demographic data, and a five-fold cross-validation method was applied for internal validation. Levels of urinary lipids were adjusted to account for urinary creatinine levels.

resultsA total of 218 urinary lipids were identified. Single lipid analysis revealed that urinary levels of C24 ceramide and LPC (14:0) distinguished HL and no HL, with an area under the receiver operating characteristics curve of 0.792 and 0.656, respectively. Paired lipid analysis revealed that summed urinary levels of C24 ceramide and LPI (18:3), and subtraction of PG (36:5) from PC (38:2) distinguished HL and no HL even more accurately, with an area under the curve of 0.805 and 0.752, respectively. A machine learning model distinguished HL and no HL, with the highest area under the curve being 0.873 and 0.750, respectively. Limitations include the opaque black box nature of machine learning techniques.

conclusionsUrinary levels of C24 ceramide, along with those of C24 ceramide plus LPI (18:3), could be potential biomarkers for HL. Machine learning-coupled urinary lipidomics may play an important role in the next-generation AI- driven diagnostic systems for IC/BPS.

Indexed as

Cystitis, InterstitialLipidomicsLipidsMachine LearningAdultAgedBiomarkersFemaleHumansMaleMiddle AgedBiomarkersLipidsBiomarkerBladder pain syndromeHunnerICIC/BPSInterstitial cystitisLearningLipidomicsMachineUrinary

Identifiers

PMID40249505
PMCPMC12008056

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.