Evidence map›Paper›PMID 40274265›Full record

ArticleNucleic acids research2025

Unexpected enzymatic function of an ancient nucleic acid-binding fold.

Rylan R Watkins, Stella Bockelman, Anna Vradi, Kaylee Grabarkewitz, Alexa Pyun, Josephine Stark, Vicki H Wysocki, Juan D Alfonzo, Karin Musier-Forsyth

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Rylan R WatkinsDepartment of Chemistry and Biochemistry, Center for RNA Biology, Ohio State University, Columbus, OH, 43220, United States.
Stella BockelmanDepartment of Chemistry and Biochemistry, Center for RNA Biology, Ohio State University, Columbus, OH, 43220, United States.
Anna VradiDepartment of Chemistry and Biochemistry, Center for RNA Biology, Ohio State University, Columbus, OH, 43220, United States.
Kaylee GrabarkewitzDepartment of Chemistry and Biochemistry, Center for RNA Biology, Ohio State University, Columbus, OH, 43220, United States.
Alexa PyunDepartment of Chemistry and Biochemistry, Center for RNA Biology, Ohio State University, Columbus, OH, 43220, United States.
Josephine StarkDepartment of Chemistry and Biochemistry, Center for RNA Biology, Ohio State University, Columbus, OH, 43220, United States.
Vicki H WysockiDepartment of Chemistry and Biochemistry, Center for RNA Biology, Ohio State University, Columbus, OH, 43220, United States.
Juan D AlfonzoDepartment of Molecular Biology, Cell Biology and Biochemistry, The Brown RNA Center, Brown University, Providence, RI, 02912, United States.ORCID 0009-0007-4759-8870
Karin Musier-ForsythDepartment of Chemistry and Biochemistry, Center for RNA Biology, Ohio State University, Columbus, OH, 43220, United States.ORCID 0000-0002-0354-4172

Funding

Waters Select Series Cyclic IMS for P41 Native MS Resource Application to Alzheimer's DiseaseP41GM128577 · NIGMS · OHIO STATE UNIVERSITY · PI WYSOCKI, VICKI H. · 2018 to 2022
$7.6M
Native Mass Spectrometry Guided Structural Biology CenterRM1GM149374 · NIGMS · OHIO STATE UNIVERSITY · PI Vicki H. Wysocki · 2023 to 2026
$5.0M
Translational quality control by tRNA-editing domainsR35GM141880 · NIGMS · OHIO STATE UNIVERSITY · PI Karin M Musier-Forsyth · 2021 to 2026
$2.9M
NIGMS NIH HHS P41 GM128577NIGMS NIH HHS R35 GM141880NIGMS NIH HHS RM1 GM149374NIH HHS R35 GM141880
6 · The paper itself

Abstract

Aminoacyl-tRNA synthetases (ARSs) are indispensable for all living organisms and their associated aminoacyl-tRNA editing domains ensure the fidelity of translation. In eukaryotes, ARSs form a multi-aminoacyl-tRNA synthetase complex (MSC), which is assembled together with several nonsynthetase scaffolding proteins. The MSC found in Trypanosoma brucei (Tb) includes two proteins with oligosaccharide/oligonucleotide-binding (OB) folds-MSC-associated protein 1 (MCP1) and MCP2-and one known trans-editing factor, MCP3, an Ala-tRNA deacylase. The activity of MCP1 was unexplored until now. Our study shows that recombinantly-expressed and purified MCP1 also deacylates Ala-tRNAs despite lacking known tRNA-editing domain homology. Domain deletion studies reveal that the OB-fold houses the catalytic pocket and mutation of any one of three conserved OB-fold residues (K326, R331, S335) abolishes activity. Assays with Saccharomyces cerevisiae Arc1p reveal that MCP1's deacylation activity is conserved across organisms. This discovery explains the 3' CCA-end binding activity of this protein family and uncovers an ancient nucleic acid binding domain's unexpected enzymatic function.

Indexed as

Amino Acyl-tRNA SynthetasesProtozoan ProteinsRNA-Binding ProteinsCatalytic DomainModels, MolecularSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrypanosoma brucei bruceiAmino Acyl-tRNA SynthetasesProtozoan ProteinsRNA-Binding ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID40274265
PMCPMC12021450

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.