Evidence map›Paper›PMID 40279404›Full record

ArticleScience immunology2025

Clone tracking through repeated malaria identifies high-fidelity memory CD4 T cell responses.

Jason Nideffer, Florian Bach, Felistas Nankya, Kenneth Musinguzi, Šimon Borna, Michelle Mantilla, Maato Zedi, Aracely Garcia Romero, Chloe Gerungan, Nora Yang and 20 more

Abstract read
In one paragraph

Article in Science immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
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  8. CXCR6bioRxiv : the preprint server for biology · 2025
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Jason NidefferDepartment of Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0002-4421-8656
Florian BachDepartment of Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0002-0126-5516
Felistas NankyaInfectious Diseases Research Collaboration, Kampala, Uganda.
Kenneth MusinguziInfectious Diseases Research Collaboration, Kampala, Uganda.ORCID 0000-0001-6890-8988
Šimon BornaDivision of Hematology, Oncology, Stem Cell Transplantation and Regenerative Medicine, Department of Pediatrics, Stanford University, Stanford, CA, USA.ORCID 0000-0001-8445-2634
Michelle MantillaDivision of Hematology, Oncology, Stem Cell Transplantation and Regenerative Medicine, Department of Pediatrics, Stanford University, Stanford, CA, USA.ORCID 0009-0006-8764-3245
Maato ZediInfectious Diseases Research Collaboration, Kampala, Uganda.ORCID 0000-0001-9430-0626
Aracely Garcia RomeroDepartment of Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0002-7845-1296
Chloe GerunganDepartment of Medicine, Stanford University, Stanford, CA, USA.
Nora YangDepartment of Medicine, Stanford University, Stanford, CA, USA.ORCID 0009-0008-6839-898X
Soyeon KimDepartment of Medicine, Stanford University, Stanford, CA, USA.
Kattria van der PloegDepartment of Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0002-3183-3190
Kylie CamanagDepartment of Medicine, Stanford University, Stanford, CA, USA.ORCID 0009-0000-8858-4378
Luis LopezDepartment of Medicine, Stanford University, Stanford, CA, USA.ORCID 0009-0000-2227-6524
Evelyn NansubugaInfectious Diseases Research Collaboration, Kampala, Uganda.
Joaniter I NankabirwaInfectious Diseases Research Collaboration, Kampala, Uganda.ORCID 0000-0001-7818-3845
Emmanuel ArinaitweInfectious Diseases Research Collaboration, Kampala, Uganda.
Potchara BoonratDepartment of Medicine, Stanford University, Stanford, CA, USA.ORCID 0009-0005-8812-292X
Steven StrubbeDivision of Hematology, Oncology, Stem Cell Transplantation and Regenerative Medicine, Department of Pediatrics, Stanford University, Stanford, CA, USA.ORCID 0000-0003-0361-2523
Alma-Martina CepikaDivision of Hematology, Oncology, Stem Cell Transplantation and Regenerative Medicine, Department of Pediatrics, Stanford University, Stanford, CA, USA.ORCID 0000-0003-2862-1901
Saki TakahashiDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.ORCID 0000-0001-5413-5507
Grant DorseyDepartment of Medicine, Division of HIV, ID, and Global Medicine, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0003-0740-0317
Bryan GreenhouseDepartment of Medicine, Division of HIV, ID, and Global Medicine, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0003-0287-9111
Isabel Rodriguez-BarraquerDepartment of Medicine, Division of HIV, ID, and Global Medicine, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0001-6784-1021
Moses R KamyaInfectious Diseases Research Collaboration, Kampala, Uganda.ORCID 0000-0001-9106-4234
Rosa BacchettaDivision of Hematology, Oncology, Stem Cell Transplantation and Regenerative Medicine, Department of Pediatrics, Stanford University, Stanford, CA, USA.ORCID 0000-0002-0606-6268
Isaac SsewanyanaInfectious Diseases Research Collaboration, Kampala, Uganda.
Ashraful HaqueDepartment of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Parkville, Victoria, Australia.ORCID 0000-0003-2260-0026
Maria Grazia RoncaroloDivision of Hematology, Oncology, Stem Cell Transplantation and Regenerative Medicine, Department of Pediatrics, Stanford University, Stanford, CA, USA.ORCID 0000-0003-1636-1495
Prasanna JagannathanDepartment of Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0001-6305-758X

Funding

Transmission ProjectU19AI089674 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MATTHEW G DORSEY, MOSES Robert KAMYA · 2010 to 2026
$29.3M
MOLECULAR BASIS OF HOST-PARASITE INTERACTIONT32AI007328 · NIAID · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 1987 to 2026
$11.9M
Computational models of naturally acquired immunity to falciparum malariaU01AI150741 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BUTTE, ATUL J, GREENHOUSE, BRYAN R · 2020 to 2024
$7.4M
Deciphering mechanisms of CD4+ T cell-dependent clinical immunity to repeated Plasmodium infectionsR01AI177377 · NIAID · STANFORD UNIVERSITY · PI Ashraful Haque, Prasanna Jagannathan · 2024 to 2026
$2.0M
NIAID NIH HHS R01 AI177377NIAID NIH HHS T32 AI007328NIAID NIH HHS U01 AI150741NIAID NIH HHS U19 AI089674
6 · The paper itself

Abstract

Few studies have tracked human CD4

Indexed as

CD4-Positive T-LymphocytesImmunologic MemoryMalaria, FalciparumMemory T CellsPlasmodium falciparumT-Lymphocytes, RegulatoryAdolescentAdultChildChild, PreschoolClone CellsFemaleHumansMaleUgandaYoung Adult

Identifiers

PMID40279404
PMCPMC12650476

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.