Evidence map›Paper›PMID 40284693›Full record

ArticleMicroorganisms2025

Pangenome Analysis of

Kelly Y Olivos-Caicedo, Francelys V Fernandez-Materan, Steven L Daniel, Karthik Anantharaman, Jason M Ridlon, João M P Alves

Abstract read
In one paragraph

Article in Microorganisms, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Kelly Y Olivos-CaicedoDepartment of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo 05508-000, Brazil.ORCID 0000-0003-2380-5525
Francelys V Fernandez-MateranMicrobiome Metabolic Engineering Theme, Carl R. Woese Institute for Genomic Biology, Urbana, IL 61801, USA.ORCID 0000-0001-9731-8493
Steven L DanielDepartment of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.ORCID 0000-0002-0008-8298
Karthik AnantharamanDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706, USA.
Jason M RidlonMicrobiome Metabolic Engineering Theme, Carl R. Woese Institute for Genomic Biology, Urbana, IL 61801, USA.ORCID 0000-0001-5813-099X
João M P AlvesDepartment of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo 05508-000, Brazil.ORCID 0000-0001-5914-2087

Funding

Diet modulation of bacterial sulfur & bile acid metabolism and colon cancer riskR01CA204808 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI GASKINS, REX, MUTLU, ECE A. · 2016 to 2020
$2.0M
Gut bacterial metabolism of the side-chain of corticosteroidsR01GM145920 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI RIDLON, JASON MICHAEL · 2022 to 2025
$1.6M
Role of Gut Bacterial Side-Chain Cleavage of Cortisol in Host 11Beta-Hydroxyandrostenedione FormationR01GM134423 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI RIDLON, JASON MICHAEL · 2020 to 2023
$1.3M
Studies towards a pan-genome and genetic manipulation of Clostridium scindensR03AI147127 · NIAID · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI RIDLON, JASON MICHAEL · 2020 to 2021
$151k
NCI NIH HHS R01 CA204808NIAID NIH HHS R03 AI147127NIGMS NIH HHS R01 GM134423NIGMS NIH HHS R01 GM145920NIH HHS 1R03AI147127-20A1
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

7α-dehydroxylationbile acidsClostridium scindenscore genomedeoxycholic acidpangenome

Identifiers

PMID40284693
PMCPMC12029741

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.