Evidence map›Paper›PMID 40286281›Full record

ArticleThe Plant journal : for cell and molecular biology2025

Retromer protein VPS29 plays a crucial and positive role in the sumoylation system mediated by E3 SUMO ligase SIZ1.

Wang Ki Min, Jun Soo Kwak, Dae Hwan Kwon, Sung-Il Kim, Sang Woo Park, Jiyoung Ahn, Soobin Cho, Myung-Jin Kim, Seung Ju Lee, Jong Tae Song and 2 more

Abstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. SIZ1-mediated SUMOylation of HAT1 enhances plant thermotolerance in Arabidopsis.The Plant journal : for cell and molecular biology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Wang Ki Min *Department of Agriculture, Forestry and Bioresources, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Korea.ORCID 0000-0002-1666-0527
Jun Soo Kwak *Department of Agriculture, Forestry and Bioresources, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Korea.
Dae Hwan Kwon *Department of Agriculture, Forestry and Bioresources, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Korea.
Sung-Il KimDepartment of Agriculture, Forestry and Bioresources, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Korea.
Sang Woo ParkDepartment of Agriculture, Forestry and Bioresources, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Korea.
Jiyoung AhnDepartment of Agriculture, Forestry and Bioresources, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Korea.
Soobin ChoDepartment of Biological Sciences, Research Institute of Women's Health and Digital Humanity Center, Sookmyung Women's University, Seoul, 04310, Korea.
Myung-Jin KimDepartment of Biological Sciences, Research Institute of Women's Health and Digital Humanity Center, Sookmyung Women's University, Seoul, 04310, Korea.
Seung Ju LeeDepartment of Agriculture, Forestry and Bioresources, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Korea.
Jong Tae SongDepartment of Applied Biosciences, Kyungpook National University, Daegu, 41566, Korea.
Yonghwan KimDepartment of Biological Sciences, Research Institute of Women's Health and Digital Humanity Center, Sookmyung Women's University, Seoul, 04310, Korea.
Hak Soo SeoDepartment of Agriculture, Forestry and Bioresources, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Korea.ORCID 0000-0002-0148-9931

Funding

Korea Government (MSIT) 2021R1A2C1003446
6 · The paper itself

Abstract

Vacuolar protein sorting 29 (VPS29) functions in retrograde protein transport as a component of the retromer complex. However, the role of VPS29 in the regulation of post-translational modifications, such as sumoylation and ubiquitination, has not been elucidated. In this study, we demonstrate that VPS29 positively regulates SIZ/PIAS-type E3 SUMO (Small ubiquitin-related modifier) ligase-mediated sumoylation systems. In Arabidopsis, vps29-3 mutants display upregulated salicylic acid (SA) signaling pathways and reactive oxygen species accumulation, similar to those observed in siz1 mutants. Arabidopsis VPS29 (AtVPS29) directly interacts with the Arabidopsis E3 SUMO ligase SIZ1 (AtSIZ1) and localizes not only to the cytoplasm but also to the nucleus. The loss of AtVPS29 leads to a depletion of AtSIZ1, whereas the E3 ubiquitin ligase constitutive photomorphogenic 1 (COP1), an upstream regulator of AtSIZ1, accumulates in vps29-3 mutants. Conversely, overexpression of AtVPS29 results in the accumulation of AtSIZ1 and the depletion of COP1 in transgenic Arabidopsis. Similarly, in human cells, silencing of hVPS29 leads to the depletion of the E3 SUMO ligase, PIAS1, and the accumulation of huCOP1. Under heat stress conditions, the levels of SUMO-conjugates are significantly lower in Arabidopsis vps29-3 mutants, indicating a regulatory role of AtVPS29 on AtSIZ1 activity. Moreover, AtVPS29 inhibits ubiquitination pathway-dependent degradation of AtSIZ1. Notably, AtSIZ1 forms a complex with AtVPS29 and trimeric retromer proteins. Taken together, our results indicate that VPS29 plays an essential role in signal transduction by regulating SIZ/PIAS-type E3 ligase-dependent sumoylation in both plants and animals.

Indexed as

ArabidopsisArabidopsis ProteinsLigasesSumoylationUbiquitin-Protein LigasesVesicular Transport ProteinsGene Expression Regulation, PlantHumansReactive Oxygen SpeciesSalicylic AcidSignal TransductionUbiquitinationArabidopsis ProteinsLigasesReactive Oxygen SpeciesSalicylic AcidSIZ1 protein, ArabidopsisUbiquitin-Protein LigasesVesicular Transport ProteinsCOP1E3 SUMO ligasePIAS1retromer proteinSIZ1SUMOsumoylationvacuolar protein sortingVPS29

Identifiers

PMID40286281
PMCPMC12033008

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.