Evidence map›Paper›PMID 40287415›Full record

ArticleNature communications2025

Structural basis for the activation of proteinase-activated receptors PAR1 and PAR2.

Zongyang Lyu, Xiaoxuan Lyu, Andrey G Malyutin, Guliang Xia, Daniel Carney, Vinicius M Alves, Matthew Falk, Nidhi Arora, Hua Zou, Aaron P McGrath and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Zongyang Lyu *Takeda Development Center Americas, Inc, 9625 Towne Centre Drive, San Diego, CA, USA.
Xiaoxuan Lyu *Takeda Development Center Americas, Inc, 9625 Towne Centre Drive, San Diego, CA, USA.
Andrey G Malyutin *Takeda Development Center Americas, Inc, 9625 Towne Centre Drive, San Diego, CA, USA.ORCID http://orcid.org/0000-0003-1716-5437
Guliang XiaTakeda Development Center Americas, Inc, 9625 Towne Centre Drive, San Diego, CA, USA.
Daniel CarneyTakeda Development Center Americas, Inc, 9625 Towne Centre Drive, San Diego, CA, USA.ORCID http://orcid.org/0000-0003-2741-8899
Vinicius M AlvesTakeda Development Center Americas, Inc, 9625 Towne Centre Drive, San Diego, CA, USA.ORCID http://orcid.org/0000-0002-6182-1748
Matthew FalkTakeda Development Center Americas, Inc, 9625 Towne Centre Drive, San Diego, CA, USA.
Nidhi AroraTakeda Development Center Americas, Inc, 9625 Towne Centre Drive, San Diego, CA, USA.
Hua ZouTakeda Development Center Americas, Inc, 9625 Towne Centre Drive, San Diego, CA, USA.
Aaron P McGrathTakeda Development Center Americas, Inc, 9625 Towne Centre Drive, San Diego, CA, USA. aaron.mcgrath@takeda.com.ORCID http://orcid.org/0009-0009-6584-9789
Yanyong KangTakeda Development Center Americas, Inc, 9625 Towne Centre Drive, San Diego, CA, USA. kangyanyong@gmail.com.ORCID http://orcid.org/0000-0003-3601-0043

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the proteinase-activated receptor (PAR) subfamily of G protein-coupled receptors (GPCRs) play critical roles in processes like hemostasis, thrombosis, development, wound healing, inflammation, and cancer progression. Comprising PAR1-PAR4, these receptors are specifically activated by protease cleavage at their extracellular amino terminus, revealing a 'tethered ligand' that self-activates the receptor. This triggers complex intracellular signaling via G proteins and beta-arrestins, linking external protease signals to cellular functions. To date, direct structural visualization of these ligand-receptor complexes has been limited. Here, we present structural snapshots of activated PAR1 and PAR2 bound to their endogenous tethered ligands, revealing a shallow and constricted orthosteric binding pocket. Comparisons with antagonist-bound structures show minimal conformational changes in the TM6 helix and larger movements of TM7 upon activation. These findings reveal a common activation mechanism for PAR1 and PAR2, highlighting critical residues involved in ligand recognition. Additionally, the structure of PAR2 bound to a pathway selective antagonist, GB88, demonstrates how potent orthosteric engagement can be achieved by a small molecule mimicking the endogenous tethered ligand's interactions.

Indexed as

Receptor, PAR-1Receptor, PAR-2Binding SitesCrystallography, X-RayHumansLigandsProtein BindingProtein ConformationSignal TransductionF2RL1 protein, humanLigandsReceptor, PAR-1Receptor, PAR-2

Identifiers

PMID40287415
PMCPMC12033368

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.