Evidence map›Paper›PMID 40287537›Full record

ArticleScientific reports2025

Characterisation of the Gillenia S-locus provides insight into evolution of the nonself-recognition self-incompatibility system in apple.

Ruiling Wang, Cecilia H Deng, Amandine Cornille, William Marande, Elena López-Girona, Toshi Foster, Deepa Bowatte, Ting-Hsuan Chen, David Chagné, Robert J Schaffer and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ruiling Wang *The New Zealand Institute for Plant and Food Research Ltd, Private Bag 92169, Auckland, 1142, New Zealand.
Cecilia H Deng *The New Zealand Institute for Plant and Food Research Ltd, Private Bag 92169, Auckland, 1142, New Zealand.
Amandine CornilleUniversité Paris Saclay, INRAE, CNRS, AgroParisTech, GQE-LeMoulon, 91190, Gif-sur- Yvette, France.
William MarandeINRAE, CNRGV, 31326, Castanet-Tolosan, France.
Elena López-GironaThe New Zealand Institute for Plant and Food Research Ltd, Private Bag 11600, Palmerston North, 4442, New Zealand.
Toshi FosterThe New Zealand Institute for Plant and Food Research Ltd, 55 Old Mill Lane, Motueka, 7198, New Zealand.
Deepa BowatteThe New Zealand Institute for Plant and Food Research Ltd, Private Bag 11600, Palmerston North, 4442, New Zealand.
Ting-Hsuan ChenThe New Zealand Institute for Plant and Food Research Ltd, Private Bag 92169, Auckland, 1142, New Zealand.
David ChagnéThe New Zealand Institute for Plant and Food Research Ltd, Private Bag 11600, Palmerston North, 4442, New Zealand.
Robert J SchafferThe New Zealand Institute for Plant and Food Research Ltd, 55 Old Mill Lane, Motueka, 7198, New Zealand. robert.schaffer@plantandfood.co.nz.
Hilary S IrelandThe New Zealand Institute for Plant and Food Research Ltd, Private Bag 92169, Auckland, 1142, New Zealand. hilary.ireland@plantandfood.co.nz.

Funding

Agence Nationale de la Recherche Project-ANR-21-CE20-0005The New Zealand Ministry of Business, Innovation and Employment SSIF-C11X1702
6 · The paper itself

Abstract

Self-incompatibility (SI) in plants has evolved independently multiple times and S-RNase-based gametophytic self-incompatibility (GSI) is most common. The Rosaceae family possesses both self-recognition (Prunus) and nonself-recognition (Malus) GSI systems, and the latter is widespread in flowering plants. Gillenia trifoliata is a Rosaceae species related to Prunus and Malus, providing utility for understanding SI evolution. Gillenia is sister taxon to Malus, but unlike Malus, has not undergone polyploidisation. In addition, the common ancestor of Gillenia and Prunus is close to the origin of the subfamily. Using a highly contiguous Gillenia genome, orthologous regions to both Malus and Prunus S-loci were identified. Only the Prunus-like S-locus was highly polymorphic and had signatures of a functional S-locus including positive selection of the S-RNase. This suggests a self-recognition system controls SI in Gillenia, and the common ancestors of Gillenia and Prunus, and Gillenia and the apple tribe, likely had a self-recognition SI system. Comparative genomics between Gillenia and Malus suggest apple lost the self-recognition mechanism, and a nonself-recognition mechanism evolved independently from a rudimentary locus with at least one male S-determinant. Repetitive sequences in the Malus-like S-locus in Gillenia may facilitate illegitimate recombination, suggesting putative mechanisms of evolution of nonself-recognition S-loci.

Indexed as

Evolution, MolecularMalusRosaceaeSelf-Incompatibility in Flowering PlantsGenome, PlantPhylogenyPlant ProteinsRibonucleasesPlant ProteinsRibonucleasesGilleniaMalusNonself-recognitionSelf-incompatibilitySelf-recognitionS-locus

Identifiers

PMID40287537
PMCPMC12033343

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.