Evidence map›Paper›PMID 40300031›Full record

ArticlePloS one2025

A minimalist computational model of slice hippocampal circuitry based on Neuronify for teaching neuroscience.

Lucas Longo, Thiago Lima, Maria Clara Bila, João Brogin, Jean Faber

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Lucas LongoSchool of Medical Sciences, Federal Fluminense University - UFF, Niterói, Rio de Janeiro, Brazil.ORCID 0000-0002-6180-8455
Thiago LimaSchool of Medical Sciences, Federal Fluminense University - UFF, Niterói, Rio de Janeiro, Brazil.
Maria Clara BilaSchool of Medical Sciences, Federal Fluminense University - UFF, Niterói, Rio de Janeiro, Brazil.
João BroginDepartment of Mechanical Engineering, Universidade Estadual de São Paulo - UNESP, São Paulo, Brazil.
Jean FaberDepartment of Neurology and Neurosurgery, Escola Paulista de Medicina, Universidade Federal de São Paulo - UNIFESP, São Paulo, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The hippocampal formation is vital for processing memory, learning, and spatial navigation. Existing methods are obsolete to address new emerging questions as our understanding of hippocampal circuits and its connections advances. Hence, new techniques with an accessible approach for visualizing and understanding its inner connections and circuitry are needed. Research requires a quick update of textbooks and a better integration of new media to facilitate the teaching of these neural structures. For instance, pictures and diagrams are not enough to fully express the structural and functional effects that each neural circuit imparts. Computational models adapted to these diverse contexts might be a possible solution for such challenge. The construction of minimalist computational models can be an excellent alternative in teaching complex dynamics since they reduce the use of animal models, amplify and simplify structural relationships, promote quick and easy visualization, and uncover possible functional and structural interventions with an educational goal. This interactivity is crucial for a better understanding of the causal relationships between nuclei and neural circuits. Conversely, it is important that those models are simple enough so that any student, regardless of their mathematical background, can understand and manipulate features of interest. Further, software packages that do not require programming knowledge for its use are indispensable, even though this limitation also restricts the representations possible for study. Here, we demonstrate the use of Neuronify software, which uses simple functional representations of neurons and circuits. We represent the most important pathways and connections of the hippocampal formation by building an educational and a simplified models that shows the main known relations between the subregions [Cornu Ammonis (CA)1, CA2, CA3, and CA4], afferent and efferent nucleus (dentate gyrus and subiculum), the first also seeking to couple hippocampal neuroarchitecture, with posterior validation of both by application in an educational context.

Indexed as

Computer SimulationHippocampusModels, NeurologicalNerve NetNeurosciencesAnimalsHumansNeuronsSoftware

Identifiers

PMID40300031
PMCPMC12040273

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.