Evidence mapPaperPMID 40301504Full record

ArticleScientific reports2025

Protein interactions, network pharmacology, and machine learning work together to predict genes linked to mitochondrial dysfunction in hypertrophic cardiomyopathy.

Jia-Lin Chen, Di Xiao, Yi-Jiang Liu, Zhan Wang, Zhi-Huang Chen, Rui Li, Li Li, Rong-Hai He, Shu-Yan Jiang, Xin Chen and 4 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Jia-Lin ChenThe First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University, NO.55, Zhenhai Road, Siming District, Xiamen, 361003, Fujian, China.
Di XiaoThe First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University, NO.55, Zhenhai Road, Siming District, Xiamen, 361003, Fujian, China.
Yi-Jiang LiuThe First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University, NO.55, Zhenhai Road, Siming District, Xiamen, 361003, Fujian, China.
Zhan WangThe First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University, NO.55, Zhenhai Road, Siming District, Xiamen, 361003, Fujian, China.
Zhi-Huang ChenThe First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University, NO.55, Zhenhai Road, Siming District, Xiamen, 361003, Fujian, China.
Rui LiThe First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University, NO.55, Zhenhai Road, Siming District, Xiamen, 361003, Fujian, China.
Li LiThe First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University, NO.55, Zhenhai Road, Siming District, Xiamen, 361003, Fujian, China.
Rong-Hai HeDepartment of Cardiac Surgery, Xiangan Hospital of Xiamen University, School of Medicine, Xiamen University, Xiamen, 361100, Fujian, China.
Shu-Yan JiangThe First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University, NO.55, Zhenhai Road, Siming District, Xiamen, 361003, Fujian, China.
Xin ChenThe First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University, NO.55, Zhenhai Road, Siming District, Xiamen, 361003, Fujian, China.
Lin-Xi XuThe First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University, NO.55, Zhenhai Road, Siming District, Xiamen, 361003, Fujian, China.
Feng-Chun LuDepartment of General Surgery, Fujian Medical University Union Hospital, No. 29 Xinquan Road, Fuzhou, 350001, China. fengchun160@fjmu.edu.cn.
Jia-Mao WangThe First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University, NO.55, Zhenhai Road, Siming District, Xiamen, 361003, Fujian, China. 635442665@qq.com.
Zhong-Gui ShanThe First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University, NO.55, Zhenhai Road, Siming District, Xiamen, 361003, Fujian, China. szgdoctor@126.com.

Funding

National Natural Science Foundation of China 82070291
6 · The paper itself

Abstract

This study looked at possible targets for hypertrophic cardiomyopathy (HCM), a condition marked by thickening of the ventricular wall, primarily in the left ventricle. We employed differential gene analysis and weighted gene co-expression network analysis (WGCNA) on samples. We then carried out an enrichment analysis. We also investigated the process of immunological infiltration. We employed six machine learning techniques and two protein-protein interaction (PPI) network gene selection approaches to search for the most characteristic gene (MCG). In the validation ladder, we verified the expression of MCG. Furthermore, we examined the MCG expression levels in HCM animal and cell models. Finally, we performed molecular docking and predicted potential medications for HCM treatment. 7975 differentially expressed genes (DEGs) were found in our study. We also identified 236 genes in the blue module using WGCNA. Screening at the transcriptome and protein levels was used to mine MCG. The final result screened CCAAT/Enhancer Binding Protein Delta (CEBPD) as MCG. We confirmed that MCG expression matched the outcomes of the experimental ladder. The level of CEBPD mRNA and protein was lowered in HCM animal and cellular models. Given that Abt-751 had the highest binding affinity to CEBPD, it might be a projected targeted medication. We found a new target gene for HCM called CEBPD, which is probably going to function by mitochondrial dysfunction. An innovative aim for the management or avoidance of HCM is offered by this analysis. Abt-751 may be a predicted targeted drug for HCM that had the greatest binding affinity with CEBPD.

Indexed as

Cardiomyopathy, HypertrophicMachine LearningMitochondriaProtein Interaction MapsAnimalsDisease Models, AnimalGene Expression ProfilingGene Regulatory NetworksHumansMolecular Docking SimulationTranscriptomeBioinformaticsHypertrophic cardiomyopathyImmune microenvironmentMachine learningMitochondrial dysfunctionMolecular docking

Identifiers

PMID40301504
PMCPMC12041389

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.