Evidence map›Paper›PMID 40304602›Full record

ArticleACS biomaterials science & engineering2025

Matrix Stiffness and Biochemistry Govern Colorectal Cancer Cell Growth and Signaling in User-Programmable Synthetic Hydrogels.

Irina Kopyeva, Ross C Bretherton, Jessica L Ayers, Ming Yu, William M Grady, Cole A DeForest

Abstract read
In one paragraph

Article in ACS biomaterials science & engineering, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Irina KopyevaDepartment of Bioengineering, University of Washington, Seattle 98105, Washington, United States.ORCID 0000-0003-3740-6971
Ross C BrethertonDepartment of Bioengineering, University of Washington, Seattle 98105, Washington, United States.ORCID 0000-0002-9567-8556
Jessica L AyersTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle 98109, Washington, United States.
Ming YuTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle 98109, Washington, United States.
William M GradyTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle 98109, Washington, United States.
Cole A DeForestDepartment of Bioengineering, University of Washington, Seattle 98105, Washington, United States.ORCID 0000-0003-0337-3577

Funding

Understanding adenoma progression: Interplay among tissue microenvironment, clonal architecture, and gut microbiomeU54CA274374 · NCI · FRED HUTCHINSON CANCER CENTER · PI Kristina A. Matkowskyj · 2022 to 2026
$10.7M
Interdisciplinary Tranining in Cancer ResearchT32CA080416 · NCI · UNIVERSITY OF WASHINGTON · PI STODDARD, BARRY L. · 1998 to 2023
$9.7M
The role of the senescent microenvironment on cancer initiating cells in the colon.U01AG077920 · NIA · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GRADY, WILLIAM MALLORY · 2021 to 2025
$2.6M
Translational Science of Gastrointestinal Cancer Initiation and ProgressionR50CA233042 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Ming Yu · 2018 to 2026
$2.4M
Mimicking, Exploiting, and Understanding Biology's Heterogeneity in 4DR35GM138036 · NIGMS · UNIVERSITY OF WASHINGTON · PI Cole A DeForest · 2020 to 2026
$2.3M
A 4D-tunable hydrogel for the study of the impact of the tumor microenvironment on the development of colorectal cancerR01CA289291 · NCI · UNIVERSITY OF WASHINGTON · PI Nancy L. Allbritton, Cole A DeForest · 2024 to 2026
$1.6M
On-Demand Modulation of Extracellular Matrix Mechanics for Studying RhoA Activation in Primary and Metastatic Colorectal CancerR21CA283686 · NCI · UNIVERSITY OF WASHINGTON · PI DEFOREST, COLE A, GRADY, WILLIAM MALLORY · 2024 to 2024
$428k
NCI NIH HHS R01 CA289291NCI NIH HHS R21 CA283686NCI NIH HHS R50 CA233042NCI NIH HHS T32 CA080416NCI NIH HHS U54 CA274374NIA NIH HHS U01 AG077920NIGMS NIH HHS R35 GM138036
6 · The paper itself

Abstract

Colorectal cancer (CRC) studies in vitro have been conducted almost exclusively on 2D cell monolayers or suspension spheroid cultures. Though these platforms have shed light on many important aspects of CRC biology, they fail to recapitulate essential cell-matrix interactions that often define in vivo function. Toward filling this knowledge gap, synthetic hydrogel biomaterials with user-programmable matrix mechanics and biochemistry have gained popularity for culturing cells in a more physiologically relevant 3D context. Here, using a poly(ethylene glycol)-based hydrogel model, we systematically assess the role of matrix stiffness and fibronectin-derived RGDS adhesive peptide presentation on CRC colony morphology and proliferation. Highlighting platform generalizability, we demonstrate that these hydrogels can support the viability and promote spontaneous spheroid or multicellular aggregate formation of six CRC cell lines that are commonly utilized in biomedical research. These gels are engineered to be fully degradable via a "biologically invisible" sortase-mediated reaction, enabling the triggered recovery of single cells and spheroids for downstream analysis. Using these platforms, we establish that substrate mechanics play a significant role in colony growth: soft conditions (∼300 Pa) encourage robust colony formation, whereas stiffer (∼2 kPa) gels severely restrict growth. Tuning the RGDS concentration did not affect the colony morphology. Additionally, we observe that epidermal growth factor receptor (EGFR) signaling in Caco-2 cells is influenced by adhesion ligand identity─whether the adhesion peptide was derived from collagen type I (DGEA) or fibronectin (RGDS)─with DGEA yielding a marked decrease in the level of downstream protein kinase phosphorylation. Taken together, this study introduces a versatile method to culture and probe CRC cell-matrix interactions within engineered 3D biomaterials.

Indexed as

Colorectal NeoplasmsExtracellular MatrixHydrogelsCell Line, TumorCell ProliferationFibronectinsHumansOligopeptidesPolyethylene GlycolsSignal TransductionSpheroids, CellularFibronectinsHydrogelsOligopeptidesPolyethylene Glycols3D hydrogel modelcolorectal cancersortase

Identifiers

PMID40304602
PMCPMC12164295

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.