Evidence map›Paper›PMID 40307555›Full record

ArticleNature2025

Single-cell transcriptomics reveal how root tissues adapt to soil stress.

Mingyuan Zhu, Che-Wei Hsu, Lucas L Peralta Ogorek, Isaiah W Taylor, Salvatore La Cavera, Dyoni M Oliveira, Lokesh Verma, Poonam Mehra, Medhavinee Mijar, Ari Sadanandom and 6 more

Abstract read
In one paragraph

Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Review
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  7. Review
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  9. Review
  10. Article
  11. Postbiotic metabolites fromExperimental and therapeutic medicine · 2026
    Article
  12. Single-cell insights into plant growth, adaptation, and evolution.Journal of integrative plant biology · 2026
    Review
  13. Review
  14. Review
  15. Review
  16. Review
  17. Review
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Mingyuan Zhu *Department of Biology, Duke University, Durham, NC, USA.
Che-Wei Hsu *Department of Biology, Duke University, Durham, NC, USA.ORCID 0000-0003-3709-9748
Lucas L Peralta OgorekPlant and Crop Science Department, School of Biosciences, University of Nottingham, Nottingham, UK.
Isaiah W TaylorDepartment of Biology, Duke University, Durham, NC, USA.
Salvatore La CaveraOptics and Photonics Group, Faculty of Engineering, University of Nottingham, Nottingham, UK.ORCID 0000-0003-0210-3102
Dyoni M OliveiraDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Lokesh VermaPlant and Crop Science Department, School of Biosciences, University of Nottingham, Nottingham, UK.
Poonam MehraPlant and Crop Science Department, School of Biosciences, University of Nottingham, Nottingham, UK.
Medhavinee MijarDepartment of Biology, Duke University, Durham, NC, USA.
Ari SadanandomDepartment of Biosciences, University of Durham, Durham, UK.
Fernando Perez-CotaOptics and Photonics Group, Faculty of Engineering, University of Nottingham, Nottingham, UK.
Wout BoerjanDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID 0000-0003-1495-510X
Trevor M NolanDepartment of Biology, Duke University, Durham, NC, USA.ORCID 0000-0003-1362-2557
Malcolm J BennettPlant and Crop Science Department, School of Biosciences, University of Nottingham, Nottingham, UK. malcolm.bennett@nottingham.ac.uk.ORCID 0000-0003-0475-390X
Philip N BenfeyDepartment of Biology, Duke University, Durham, NC, USA. philip.benfey@duke.edu.
Bipin K PandeyPlant and Crop Science Department, School of Biosciences, University of Nottingham, Nottingham, UK. bipin.pandey@nottingham.ac.uk.ORCID 0000-0002-9614-1347

Funding

A Molecular Genetic Analysis of Root MorphogenesisR35GM131725 · NIGMS · DUKE UNIVERSITY · PI BENFEY, PHILIP N · 2019 to 2023
$1.5M
NIGMS NIH HHS R35 GM131725
6 · The paper itself

Abstract

Land plants thrive in soils showing vastly different properties and environmental stresses

Indexed as

OryzaPlant RootsSingle-Cell AnalysisSoilTranscriptomeAbscisic AcidAdaptation, PhysiologicalCell WallGene Expression ProfilingGene Expression Regulation, PlantOrgan SpecificityPhloemStress, PhysiologicalAbscisic AcidSoil

Identifiers

PMID40307555
PMCPMC12176638

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.