Evidence map›Paper›PMID 40318625›Full record

ArticleCell chemical biology2025

MapID-based quantitative mapping of chemical modifications and expression of human transfer RNA.

Mitchel L Tepe, Yitan Chen, Allison Carso, Huiqing Zhou

Abstract read
In one paragraph

Article in Cell chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Directed evolution of an mResearch square · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Mitchel L TepeChemistry Department, Boston College, Chestnut Hill, MA 02467, USA.
Yitan ChenChemistry Department, Boston College, Chestnut Hill, MA 02467, USA.
Allison CarsoChemistry Department, Boston College, Chestnut Hill, MA 02467, USA.
Huiqing ZhouChemistry Department, Boston College, Chestnut Hill, MA 02467, USA. Electronic address: huiqing.zhou@bc.edu.

Funding

INVESTIGATE SEQUENCE SPECIFICITY IN THE BIOSYNTHESIS AND RECOGNITION OF RNA CHEMICAL MODIFICATIONSR35GM150789 · NIGMS · BOSTON COLLEGE · PI Huiqing Zhou · 2023 to 2026
$1.6M
NIGMS NIH HHS R35 GM150789
6 · The paper itself

Abstract

Detection and quantification of tRNA chemical modifications are critical for understanding their regulatory functions in biology and diseases. However, tRNA-seq-based methods for modification mapping encountered challenges both experimentally (poor processivity of heavily modified tRNAs during reverse transcription or RT) and bioinformatically (frequent reads misalignment to highly similar tRNA genes). Here, we report "MapID-tRNA-seq" where we deployed an evolved reverse transcriptase (RT-1306) into tRNA-seq and developed "MapIDs" that reduce redundancy of the human tRNA genome and explicitly annotate genetic variances. RT-1306 generated robust mutations against m

Indexed as

RNA, TransferCell Line, TumorHumansRNA-Directed DNA PolymeraseRNA-Directed DNA PolymeraseRNA, Transferhuman tRNA genetic variancemammary cellstRNA chemical modificationstRNA-seq

Identifiers

PMID40318625
PMCPMC12109745

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.