Evidence map›Paper›PMID 40319099›Full record

ArticleCommunications chemistry2025

Predictability of environment-dependent formation of G-quadruplex DNAs in human mitochondria.

Lutan Liu, Shuntaro Takahashi, Sarptarshi Ghosh, Tamaki Endoh, Naoto Yoshinaga, Keiji Numata, Naoki Sugimoto

Abstract read
In one paragraph

Article in Communications chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. KRSC advances · 2026
    Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lutan Liu *FIBER (Frontier Institute for Biomolecular Engineering Research), Konan University, Chuo-ku, Kobe, Japan.
Shuntaro Takahashi *FIBER (Frontier Institute for Biomolecular Engineering Research), Konan University, Chuo-ku, Kobe, Japan. shtakaha@konan-u.ac.jp.ORCID http://orcid.org/0000-0002-7569-1761
Sarptarshi GhoshFIBER (Frontier Institute for Biomolecular Engineering Research), Konan University, Chuo-ku, Kobe, Japan.
Tamaki EndohFIBER (Frontier Institute for Biomolecular Engineering Research), Konan University, Chuo-ku, Kobe, Japan.
Naoto YoshinagaBiomacromolecule Research Team, RIKEN Center for Sustainable Resource Science, Wako-shi, Saitama, Japan.
Keiji NumataBiomacromolecule Research Team, RIKEN Center for Sustainable Resource Science, Wako-shi, Saitama, Japan.
Naoki SugimotoFIBER (Frontier Institute for Biomolecular Engineering Research), Konan University, Chuo-ku, Kobe, Japan. sugimoto@konan-u.ac.jp.ORCID http://orcid.org/0000-0003-2928-7028

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 22H04975MEXT | Japan Society for the Promotion of Science (JSPS) 24K01631MEXT | Japan Society for the Promotion of Science (JSPS) JPJSCCA20220005
6 · The paper itself

Abstract

Molecular crowding affects the stability of nucleic acids (DNA and RNA) and induces their non-canonical structures. As the level of molecular crowding varies spatio-temporally in cells, it would be beneficial to predict the behaviour of DNA and RNA structures depending on the local cellular environments. This has applications in human mitochondria, which possess an especially crowded condition. In this study, the predictability of guanine-quadruplex (G4) DNA formation in the environment specific to human mitochondria was investigated. In accordance with the stability of duplexes predicted by our nearest-neighbour parameters, the G-rich duplex stability was found to effectively decrease and G4 formation was induced in mitochondrion-like conditions compared to the nucleus-like conditions. Using a peptide-based mitochondrial targeting system, a G4 reporter assay performed in mitochondria indicated that G4 formation were more favoured in mitochondria more than in the nucleus. These findings provide insights useful for the prediction of the behaviour of nucleic acids in mitochondria.

Identifiers

PMID40319099
PMCPMC12049430

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.