Evidence map›Paper›PMID 40329837›Full record

ArticleJournal of the Royal Society, Interface2025

Active droplets controlled by enzymatic reactions.

Jacques Fries, Javier Diaz, Marie Jardat, Ignacio Pagonabarraga, Pierre Illien, Vincent Dahirel

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Control of encounter kinetics by chemically active droplets.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Active droplets controlled by enzymatic reactions.Journal of the Royal Society, Interface · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jacques FriesSorbonne Université, CNRS, Physico-Chimie des Electrolytes et Nanosystèmes Interfaciaux(PHENIX), 4 Place Jussieu, Paris 75005, France.
Javier DiazDepartament de Física de la Matèria Condensada, Universitat de Barcelona, Carrer de Martí i Franqués 1, Barcelona 08028, Spain.ORCID 0000-0002-7266-8259
Marie JardatSorbonne Université, CNRS, Physico-Chimie des Electrolytes et Nanosystèmes Interfaciaux(PHENIX), 4 Place Jussieu, Paris 75005, France.
Ignacio PagonabarragaDepartament de Física de la Matèria Condensada, Universitat de Barcelona, Carrer de Martí i Franqués 1, Barcelona 08028, Spain.ORCID 0000-0002-6187-5025
Pierre IllienSorbonne Université, CNRS, Physico-Chimie des Electrolytes et Nanosystèmes Interfaciaux(PHENIX), 4 Place Jussieu, Paris 75005, France.
Vincent DahirelSorbonne Université, CNRS, Physico-Chimie des Electrolytes et Nanosystèmes Interfaciaux(PHENIX), 4 Place Jussieu, Paris 75005, France.ORCID 0000-0001-9997-3344

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The formation of condensates is now considered a major organizing principle of eukaryotic cells. Several studies have recently shown that the properties of these condensates are affected by enzymatic reactions. We propose here a simple generic model to study the interplay between two enzyme populations and a two-state protein. In one state, the protein forms condensed droplets through attractive interactions, while in the other state, the proteins remain dispersed. Each enzyme catalyses the production of one of these two protein states only when reactants are in its vicinity. A key feature of our model is the explicit representation of enzyme trajectories, capturing the fluctuations in their local concentrations. The spatially dependent growth rate of droplets naturally arises from the stochastic motion of these explicitly modelled enzymes. Using two complementary numerical methods-(i) Brownian dynamics simulations and (ii) a hybrid method combining Cahn-Hilliard-Cook diffusion equations with Brownian dynamics for the enzymes-we investigate how enzyme concentration and dynamics influence the evolution with time and the steady-state number and size of droplets. Our results show that the concentration and diffusion coefficient of enzymes govern the formation and size-selection of biocondensates.

Indexed as

EnzymesModels, BiologicalModels, ChemicalDiffusionEnzymesactive dropletsbiocondensatesBrownian dynamicsreaction-diffusion systems

Identifiers

PMID40329837
PMCPMC12056557

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.