Evidence map›Paper›PMID 40347072›Full record

ReviewConnective tissue research2025

Spatial transcriptomic applications in orthopedics.

Thomas L Jenkins, Jasper H N Yik, Dominik R Haudenschild

Abstract readReview
In one paragraph

Review in Connective tissue research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Advances in Spatial Transcriptomics in Bone.Current osteoporosis reports · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Thomas L JenkinsDepartment of Translational Orthopedic Research, Houston Methodist Research Institute, Houston, TX, USA.ORCID 0000-0001-8462-7510
Jasper H N YikDepartment of Translational Orthopedic Research, Houston Methodist Research Institute, Houston, TX, USA.ORCID 0000-0001-7532-629X
Dominik R HaudenschildDepartment of Translational Orthopedic Research, Houston Methodist Research Institute, Houston, TX, USA.ORCID 0000-0001-9947-9864

Funding

In situ and real-time readout of nuclear mechanotransduction via single cell mechanics and site-specific fluorescence reportingR21AR083189 · NIAMS · METHODIST HOSPITAL RESEARCH INSTITUTE · PI HAUDENSCHILD, DOMINIK R · 2023 to 2023
$375k
NIAMS NIH HHS R21 AR083189
6 · The paper itself

Abstract

purposeThis review highlights the transformative impact of spatial transcriptomics on orthopedic research, focusing on its application in deciphering intricate gene expression patterns within musculoskeletal tissues.

methodsThe paper reviews literature for spatial transcriptomic methods, specifically 10X Visium, 10X Xenium, seqFISH+, MERFISH, NanoString GeoMx DSP, used on musculoskeletal tissues (cartilage, joints, bone, tendon, ligament, and synovium).

resultsSearches identified 29 published manuscripts reporting spatial transcriptomic data in cartilage, bone, tendon, synovium, and intervertebral disc. Most publications of spatial transcriptomic data are from tendon and synovium. 10X Visium has been used in 22 of the 29 papers identified. Spatial transcriptomics has been used to identify novel cell populations and cell signaling pathways that regulate development and disease.

conclusionsImaging-based spatial transcriptomic methods may be better for hypothesis testing as they generally have subcellular resolution but sequence fewer genes. Sequencing methods may be better for untargeted, shotgun approaches that can generate useful hypotheses from the spatial data from unimpaired tissue sections. Spatial transcriptomic methods could become useful for clinical diagnostics and precision medicine approaches.

Indexed as

Gene Expression ProfilingOrthopedicsTranscriptomeAnimalsHumansarthritiscartilageorthopedicsSpatial transcriptomicssynovium

Identifiers

PMID40347072
PMCPMC12328079

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.