Evidence map›Paper›PMID 40352223›Full record

ArticleNarra J2025

Identification of differentially expressed genes in resting human skeletal muscle of sedentary versus strength and endurance- trained individuals using bioinformatics analysis and in vitro validation.

Rias G Kinanti, Anditri Weningtyas, Kiky M Ariesaka, Sendhi T Puspitasari, Ni Lka Arsani, Hung E Liao

Abstract read
In one paragraph

Article in Narra J, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rias G KinantiDepartment of Medicine, Faculty of Medicine, Universitas Negeri Malang, Malang, Indonesia.
Anditri WeningtyasDepartment of Medicine, Faculty of Medicine, Universitas Negeri Malang, Malang, Indonesia.
Kiky M AriesakaDepartment of Medicine, Faculty of Medicine, Universitas Negeri Malang, Malang, Indonesia.
Sendhi T PuspitasariDepartment of Medicine, Faculty of Medicine, Universitas Negeri Malang, Malang, Indonesia.
Ni Lka ArsaniDepartment of Medicine, Faculty of Medicine, Universitas Pendidikan Ganesha, Bali, Indonesia.
Hung E LiaoDepartment of Healthcare Administration, College of Medical and Health Science, Asia University, Taichung, Taiwan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the molecular mechanisms underlying skeletal muscle adaptation to different training regimens is essential for advancing muscle health and performance interventions. The aim of this study was to investigate molecular and genetic adaptations in the resting skeletal muscle of sedentary individuals compared to strength- and endurance-trained athletes using bioinformatics and in vitro validation. Differentially expressed genes (DEG) analysis of the GSE9405 dataset was conducted. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed, followed by protein-protein interaction (PPI) network analysis and receiver operating characteristic (ROC) analysis. To validate the bioinformatics findings, the expression of two identified genes was assessed using real-time polymerase chain reaction (PCR) in professional athletes and age-matched non-athletes. Analysis of RNA expression profiles from the GSE9405 dataset identified 426 DEGs, with 165 upregulated and 261 downregulated in trained individuals. Enrichment analysis highlighted pathways related to metabolic efficiency, mitochondrial function, and muscle remodeling, all crucial for athletic performance.

Indexed as

Endurance TrainingMuscle, SkeletalPhysical EnduranceResistance TrainingSedentary BehaviorAdultAthletesComputational BiologyFemaleGene Expression ProfilingHumansMaleYoung AdultCALM3gene expression regulationphysical endurancePRKACASkeletal muscle

Identifiers

PMID40352223
PMCPMC12059816

What Socratic holds

Textmetadata
LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.