Evidence map›Paper›PMID 40354347›Full record

Observational studyPloS one2025

Automated self-service cohort selection for large-scale population sciences and observational research: The California Teachers Study researcher platform.

James V Lacey, Emma S Spielfogel, Jennifer L Benbow, Kristen E Savage, Kai Lin, Cheryl A M Anderson, Jessica Clague-DeHart, Christine N Duffy, Maria Elena Martinez, Hannah Lui Park and 3 more

Erratum issuedAbstract readObservational Study
In one paragraph

Observational study in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

James V LaceyDepartment of Computational and Quantitative Medicine, Beckman Research Institute, City of Hope, Duarte, California, United States of America.ORCID 0000-0002-4560-8592
Emma S SpielfogelDepartment of Computational and Quantitative Medicine, Beckman Research Institute, City of Hope, Duarte, California, United States of America.
Jennifer L BenbowDepartment of Computational and Quantitative Medicine, Beckman Research Institute, City of Hope, Duarte, California, United States of America.
Kristen E SavageDepartment of Computational and Quantitative Medicine, Beckman Research Institute, City of Hope, Duarte, California, United States of America.
Kai LinSan Diego Supercomputer Center, University of California San Diego, La Jolla, California, United States of America.
Cheryl A M AndersonHerbert Wertheim School of Public Health and Human Longevity Science, University of California San Diego, San Diego, California, United States of America.
Jessica Clague-DeHartSchool of Community and Global Health, Claremont Graduate University, Claremont, California, United States of America.ORCID 0000-0002-2298-3146
Christine N DuffyDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California, United States of America.
Maria Elena MartinezHerbert Wertheim School of Public Health and Human Longevity Science, University of California San Diego, San Diego, California, United States of America.
Hannah Lui ParkDepartment of Pathology and Laboratory Medicine, School of Medicine, University of California, Irvine, California, United States of America.ORCID 0000-0001-9973-1396
Caroline A ThompsonDepartment of Epidemiology, Gillings School of Global Public Health, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.
Sophia S WangDepartment of Computational and Quantitative Medicine, Beckman Research Institute, City of Hope, Duarte, California, United States of America.
Sandeep ChandraSan Diego Supercomputer Center, University of California San Diego, La Jolla, California, United States of America.

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Dwayne G. Stupack · 1985 to 2026
$124.9M
Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI John Charles Williams · 1985 to 2026
$86.3M
CALIFORNIA TEACHERS STUDYR01CA077398 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BERNSTEIN, LESLIE · 1998 to 2014
$29.7M
Oil and Gas as Drivers of Climate Change and Health: Developing unique resources to investigate multi-level and diverse effects of exposure to oil and gas wellsU01CA199277 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI LACEY, JAMES V, MARTINEZ, MARIA ELENA · 2015 to 2024
$20.7M
New Biospecimens to Enhance Research in the California Teachers Study CohortUM1CA164917 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI LACEY, JAMES V · 2012 to 2015
$10.1M
NCCDPHP CDC HHS NU58DP006344NCI NIH HHS HHSN261201800009CNCI NIH HHS HHSN261201800009INCI NIH HHS HHSN261201800015CNCI NIH HHS HHSN261201800015INCI NIH HHS HHSN261201800032CNCI NIH HHS HHSN261201800032INCI NIH HHS P30 CA023100NCI NIH HHS P30 CA033572NCI NIH HHS R01 CA077398NCI NIH HHS U01 CA199277NCI NIH HHS UM1 CA164917
6 · The paper itself

Abstract

objectiveCohort selection is ubiquitous and essential, but manual and ad hoc approaches are time-consuming, labor-intense, and difficult to scale. We sought to automate the task of cohort selection by building self-service tools that enable researchers to independently generate datasets for population sciences research. MATERIALS AND

methodsThe California Teachers Study (CTS) is a prospective observational study of 133,477 women who have been followed continuously since 1995. The CTS includes extensive survey-based and real-world data from cancer, hospitalization, and mortality linkages. We curated data from our data warehouse into a column-oriented database and developed a researcher-facing web application that guides researchers through the project lifecycle; captures researchers' inputs; and automatically generates custom and analysis-ready data, code, dictionaries, and documentation.

resultsResearchers can register, access data, and propose projects on the CTS Researcher Platform via our CTS website. The Platform supports cohort and cross-sectional study designs for cancer, mortality, and any other ICD-based phenotypes or endpoints. User-friendly prompts and menus capture analytic design, inclusion/exclusion criteria, endpoint definitions, censoring rules, and covariate selection. Our platform empowers researchers everywhere to query, choose, review, and automatically and quickly receive custom data, analytic scripts, and documentation for their research projects. Research teams can review, revise, and update their choices anytime. DISCUSSION: We replaced inefficient traditional cohort-selection processes with an integrated self-service approach that simplifies and improves cohort selection for all stakeholders. Compared with manual methods, our solution is faster and more scalable, user-friendly, and collaborative. Other studies could re-configure our individual database, project-tracking, website, and data-delivery components for their own specific needs, or they could utilize other widely available solutions (e.g., alternative database or project-tracking tools) to enable similarly automated cohort-selection in their own settings. Our comprehensive and flexible framework could be adopted to improve cohort selection in other population sciences and observational research settings.

Indexed as

AdultCaliforniaCohort StudiesDatabases, FactualFemaleHumansMiddle AgedProspective StudiesResearch Personnel

Identifiers

PMID40354347
PMCPMC12068635

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.