Evidence map›Paper›PMID 40358358›Full record

ArticleThe Journal of cell biology2025

The mitophagy receptors BNIP3 and NIX mediate tight attachment and expansion of the isolation membrane to mitochondria.

Shun-Ichi Yamashita, Ritsuko Arai, Hiroshi Hada, Benjamin Scott Padman, Michael Lazarou, David C Chan, Tomotake Kanki, Satoshi Waguri

Abstract read
In one paragraph

Article in The Journal of cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Emerging mechanisms of ATG8-independent non-canonical autophagy.Journal of physiology and biochemistry · 2026
    Review
  2. Regulation and roles of mammalian mitophagy.Nature reviews. Molecular cell biology · 2026
    Review
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  10. Mitochondrial medicine in obesity: a scoping review.Open medicine (Warsaw, Poland) · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shun-Ichi Yamashita *Department of Cellular Physiology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.ORCID 0000-0001-8892-0765
Ritsuko Arai *Department of Anatomy and Histology, Fukushima Medical University School of Medicine, Fukushima, Japan.ORCID 0000-0002-6757-0804
Hiroshi HadaDepartment of Anatomy and Histology, Fukushima Medical University School of Medicine, Fukushima, Japan.ORCID 0009-0007-6973-3658
Benjamin Scott PadmanTelethon Kids Institute, Perth Children's Hospital , Nedlands, Australia.ORCID 0000-0002-5710-6100
Michael LazarouWalter and Eliza Hall Institute of Medical Research , Parkville, Australia.ORCID 0000-0003-2150-5545
David C ChanDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0002-0191-2154
Tomotake KankiDepartment of Cellular Physiology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.ORCID 0000-0001-9646-5379
Satoshi WaguriDepartment of Anatomy and Histology, Fukushima Medical University School of Medicine, Fukushima, Japan.ORCID 0000-0001-9919-7111

Funding

Homeostatic Mechanisms Regulating Mitochondrial Health EQUIPMENT SUPPLEMENTR35GM127147 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI David C Chan · 2018 to 2026
$6.0M
Cooper Foundation RC20241396Fukushima Medical UniversityJapan Agency for Medical Research and Development JP24gm1710006Japan Society for the Promotion of Science 16KK0162Japan Society for the Promotion of Science 20H03415Japan Society for the Promotion of Science 22K06300Japan Society for the Promotion of Science 22K07207Japan Society for the Promotion of Science 23K23878Japan Society for the Promotion of Science 23K27351Japan Society for the Promotion of Science 24H02274NIGMS NIH HHS R35 GM127147Suzuken Memorial FoundationTakeda Science Foundation
6 · The paper itself

Abstract

BNIP3 and NIX are the main receptors for mitophagy, but their mechanisms of action remain elusive. Here, we used correlative light EM (CLEM) and electron tomography to reveal the tight attachment of isolation membranes (IMs) to mitochondrial protrusions, often connected with ER via thin tubular and/or linear structures. In BNIP3/NIX-double knockout (DKO) HeLa cells, the ULK1 complex and nascent IM formed on mitochondria, but the IM did not expand. Artificial tethering of LC3B to mitochondria induced mitophagy that was equally efficient in DKO cells and WT cells. BNIP3 and NIX accumulated at the segregated mitochondrial protrusions via binding with LC3 through their LIR motifs but did not require dimer formation. Finally, the average distance between the IM and the mitochondrial surface in receptor-mediated mitophagy was significantly smaller than that in ubiquitin-mediated mitophagy. Collectively, these results indicate that BNIP3 and NIX are required for the tight attachment and expansion of the IM along the mitochondrial surface during mitophagy.

Indexed as

Membrane ProteinsMitochondriaMitochondrial MembranesMitochondrial ProteinsMitophagyProto-Oncogene ProteinsTumor Suppressor ProteinsAutophagy-Related Protein-1 HomologHeLa CellsHumansIntracellular Signaling Peptides and ProteinsMicrotubule-Associated ProteinsAutophagy-Related Protein-1 HomologBNIP3 protein, humanIntracellular Signaling Peptides and ProteinsMAP1LC3B protein, humanMembrane ProteinsMicrotubule-Associated ProteinsMitochondrial ProteinsProto-Oncogene ProteinsTumor Suppressor ProteinsULK1 protein, human

Identifiers

PMID40358358
PMCPMC12071194

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.