Evidence map›Paper›PMID 40360701›Full record

ArticleNature microbiology2025

Intragenic viral silencer element regulates HTLV-1 latency via RUNX complex recruitment.

Kenji Sugata, Akhinur Rahman, Koki Niimura, Kazuaki Monde, Takaharu Ueno, Samiul Alam Rajib, Mitsuyoshi Takatori, Wajihah Sakhor, Md Belal Hossain, Sharmin Nahar Sithi and 14 more

Abstract read
In one paragraph

Article in Nature microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Kenji Sugata *Division of Genomics and Transcriptomics, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.
Akhinur Rahman *Division of Genomics and Transcriptomics, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.
Koki NiimuraDivision of Genomics and Transcriptomics, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.
Kazuaki MondeDepartment of Microbiology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan.ORCID http://orcid.org/0000-0002-8314-5306
Takaharu UenoDepartment of Microbiology, Kansai Medical University, Hirakata, Japan.ORCID http://orcid.org/0000-0002-4746-2726
Samiul Alam RajibDivision of Genomics and Transcriptomics, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.
Mitsuyoshi TakatoriDivision of Genomics and Transcriptomics, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.
Wajihah SakhorDivision of Genomics and Transcriptomics, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.
Md Belal HossainDivision of Genomics and Transcriptomics, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.ORCID http://orcid.org/0000-0002-9758-8810
Sharmin Nahar SithiDivision of Genomics and Transcriptomics, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.ORCID http://orcid.org/0009-0002-4703-4251
M Ishrat JahanDivision of Genomics and Transcriptomics, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.
Kouki MatsudaDivision of Antiviral Therapy, Joint Research Center for Human Retrovirus Infection, Kagoshima University, Kagoshima, Japan.
Mitsuharu UedaDepartment of Neurology, Graduate School of Medical Sciences, Kumamoto University, Kumamoto, Japan.ORCID http://orcid.org/0000-0002-6814-0582
Yoshihisa YamanoDepartment of Neurology, St. Marianna University School of Medicine, Kawasaki, Japan.
Terumasa IkedaDivision of Molecular Virology and Genetics, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.ORCID http://orcid.org/0000-0003-2869-9450
Takamasa UenoDivision of Infection and Immunity, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.ORCID http://orcid.org/0000-0003-4852-4236
Kiyoto TsuchiyaAIDS Clinical Center, National Center for Global Health and Medicine, Tokyo, Japan.ORCID http://orcid.org/0000-0002-8233-6653
Yuetsu TanakaSchool of Medicine, University of the Ryukyus, Okinawa, Japan.
Masahito TokunagaDepartment of Hematology, Imamura General Hospital, Kagoshima, Japan.ORCID http://orcid.org/0000-0003-1296-9006
Kenji MaedaDivision of Antiviral Therapy, Joint Research Center for Human Retrovirus Infection, Kagoshima University, Kagoshima, Japan.
Atae UtsunomiyaDepartment of Hematology, Imamura General Hospital, Kagoshima, Japan.ORCID http://orcid.org/0000-0002-8843-406X
Kazu OkumaDepartment of Microbiology, Kansai Medical University, Hirakata, Japan.
Masahiro OnoDepartment of Life Sciences, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-9284-7326
Yorifumi SatouDivision of Genomics and Transcriptomics, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan. y-satou@kumamoto-u.ac.jp.ORCID http://orcid.org/0000-0002-1495-7810

Funding

Japan Agency for Medical Research and Development (AMED) JP23fk0410052Japan Agency for Medical Research and Development (AMED) JP23jm0210074Japan Agency for Medical Research and Development (AMED) JP23wm0325068MEXT | Japan Society for the Promotion of Science (JSPS) JP20H03724MEXT | Japan Society for the Promotion of Science (JSPS) JP21K08494
6 · The paper itself

Abstract

Retroviruses integrate their genetic material into the host genome, enabling persistent infection. Human T cell leukaemia virus type 1 (HTLV-1) and human immunodeficiency virus type 1 (HIV-1) share similarities in genome structure and target cells, yet their infection dynamics differ drastically. While HIV-1 leads to high viral replication and immune system collapse, HTLV-1 establishes latency, promoting the survival of infected cells and, in some cases, leading to leukaemia. The mechanisms underlying this latency preference remain unclear. Here we analyse blood samples from people with HTLV-1 and identify an open chromatin region within the HTLV-1 provirus that functions as a transcriptional silencer and regulates transcriptional burst. The host transcription factor RUNX1 binds to this open chromatin region, repressing viral expression. Mutation of this silencer enhances HTLV-1 replication and immunogenicity, while its insertion into HIV-1 suppresses viral production. These findings reveal a strategy by which HTLV-1 ensures long-term persistence, offering potential insights into retroviral evolution and therapeutic targets.

Indexed as

Core Binding Factor Alpha 2 SubunitHTLV-I InfectionsHuman T-lymphotropic virus 1Silencer Elements, TranscriptionalVirus LatencyChromatinGene Expression Regulation, ViralHIV-1HumansProvirusesVirus ReplicationChromatinCore Binding Factor Alpha 2 SubunitRUNX1 protein, human

Identifiers

PMID40360701
PMCPMC12137137

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.